RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1101048" and tax_clade = "PVC group"

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analysis 2

tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJNA1101048 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1485864 1485864 PRJNA1101048_P_NODE_3242_length_337_cov_0.958333_g3186_i0 PRJNA1101048 3242 337 0.958333 3.22958221 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 418 2.7199999999999993e-112   NTclustered gi|2874253690|emb|OY969416.1| 412056 g3186 i0 90.184 17.6706231454006 326 25 96 4 1 322 1316071 1316393 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04967.bin.1.157 genome assembly, chromosome: 1 blastn 5955 418 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
3570379 3570379 PRJNA1101048_P_NODE_8303_length_247_cov_0.896552_g8247_i0 PRJNA1101048 8303 247 0.896552 2.21448344 Neochlamydia 112987 Bacteria Bacteria 231 2.6699999999999997e-56   NTclustered gi|2874254045|emb|OY970369.1| 305355 g8247 i0 84.232 183.538461538462 241 34 96 3 7 243 173837 174077 MAG: uncultured Chlamydiae bacterium isolate MFD06092.bin.1.176 genome assembly, chromosome: 1 blastn 45334 231 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia       uncultured Chlamydiae bacterium
23163543 23163543 PRJNA1101048_P_NODE_5479_length_278_cov_1.512195_g5423_i0 PRJNA1101048 5479 278 1.512195 4.2039021 Opitutia bacterium KCR 482 3034326 Bacteria Bacteria 243 1.41e-59   NTclustered gi|2707273910|gb|CP149973.1| 3034326 g5423 i0 91.954 131.097122302158 174 12 62 2 2 173 1392033 1391860 Opitutia bacterium KCR 482 chromosome, complete genome blastn 36445 243 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia       Opitutia bacterium KCR 482
30604695 30604695 PRJNA1101048_P_NODE_8293_length_247_cov_0.896552_g8237_i0 PRJNA1101048 8293 247 0.896552 2.21448344 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 43.5 0.018   NR HOY08766.1 2035772 g8237 i0 37.2 1.04453441295547 43 27 52.2 0 22 150 135 177 HOY08766.1 class I SAM-dependent methyltransferase [Candidatus Omnitrophota bacterium] diamond 258 43.5 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;