RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1101048", tax_clade = "Opisthokonta" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 4 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 4 ✖

bioproject 1

  • PRJNA1101048 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10414597 10414597 PRJNA1101048_P_NODE_3689_length_322_cov_1.144578_g3633_i0 PRJNA1101048 3689 322 1.144578 3.68554116 Bradybaena similaris 145626 Mollusca Mollusca 56.5 0.002   NTclustered gi|2912994531|dbj|AP039599.1| 145626 g3633 i0 100 0.791925465838509 30 0 9 0 252 281 53279038 53279009 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 18, sequence blastn 255 56.5 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
11223261 11223261 PRJNA1101048_P_NODE_2109_length_395_cov_168.757764_g2053_i0 PRJNA1101048 2109 395 168.757764 666.5931678 Metazoa 33208 Mollusca Mollusca 484 3.14e-132   NTclustered gi|2572452079|ref|XR_009385380.1| 109671 g2053 i0 91.931 66.4658227848101 347 26 88 2 21 366 1 346 PREDICTED: Physella acuta large subunit ribosomal RNA (LOC131933988), rRNA blastn 26254 488 0.991803278688525 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Physidae Physella Physella acuta
20612401 20612401 PRJNA1101048_P_NODE_1397_length_469_cov_3.641414_g1342_i0 PRJNA1101048 1397 469 3.641414 17.07823166 Physella acuta 109671 Mollusca Mollusca 527 6.209999999999998e-145   NTclustered gi|2572452079|ref|XR_009385380.1| 109671 g1342 i0 92.412 4.53304904051173 369 28 98 0 101 469 3395 3763 PREDICTED: Physella acuta large subunit ribosomal RNA (LOC131933988), rRNA blastn 2126 527 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Physidae Physella Physella acuta
21888028 21888028 PRJNA1101048_P_NODE_4038_length_311_cov_1.142857_g3982_i0 PRJNA1101048 4038 311 1.142857 3.55428527 Bradybaena similaris 145626 Mollusca Mollusca 56.5 0.002   NTclustered gi|2912999747|dbj|AP039606.1| 145626 g3982 i0 100 1.02893890675241 30 0 10 0 133 162 44154727 44154698 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 25, sequence blastn 320 56.5 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;