RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1101048" and tax_clade = "Bacteria candidate phyla"

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analysis 2

tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 2 ✖

bioproject 1

  • PRJNA1101048 · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6589327 6589327 PRJNA1101048_P_NODE_6306_length_263_cov_1.636842_g6250_i0 PRJNA1101048 6306 263 1.636842 4.30489446 Candidatus Gracilibacteria bacterium 28_42_T64 1862133 Bacteria Bacteria 128 3.88e-25   NTclustered gi|1769783243|gb|CP042461.1| 1862133 g6250 i0 82.667 5.68060836501901 150 21 56 5 110 257 1250702 1250848 Candidatus Gracilibacteria bacterium 28_42_T64 chromosome, complete genome blastn 1494 128 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Gracilibacteria bacterium 28_42_T64
29719950 29719950 PRJNA1101048_P_NODE_8310_length_247_cov_0.896552_g8254_i0 PRJNA1101048 8310 247 0.896552 2.21448344 candidate division SR1 bacterium 2044938 Bacteria Bacteria 144 1.0499999999999998e-37   NR MBB1543154.1 2044938 g8254 i0 92.7 0.995951417004049 82 6 99.6 0 2 247 161 242 MBB1543154.1 hypothetical protein [candidate division SR1 bacterium] diamond 246 144 1 Bacteria Bacteria candidate phyla   Candidatus Absconditibacteriota         candidate division SR1 bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;