RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA1098727" and tax_phylum = "Nitrospirota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nitrospirota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1098727 · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
211098 211098 PRJNA1098727_P_NODE_14441_length_165_cov_0.896552_g14200_i0 PRJNA1098727 14441 165 0.896552 1.4793108 Candidatus Nitrospira inopinata 1715989 Bacteria Bacteria 291 2.69e-74   NTclustered gi|952974062|emb|LN885086.1| 1715989 g14200 i0 98.773 0.987878787878788 163 2 99 0 2 164 1555920 1555758 Nitrospira sp. ENR4 genome assembly NiCh1, chromosome : 1 blastn 163 291 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Candidatus Nitrospira inopinata
10414497 10414497 PRJNA1098727_P_NODE_15269_length_163_cov_0.912281_g15028_i0 PRJNA1098727 15269 163 0.912281 1.48701803 Nitrospira sp. 70125 Bacteria Bacteria 231 1.63e-56   NTclustered gi|2290906964|gb|CP058931.1| 70125 g15028 i0 92.547 1.97546012269939 161 12 99 0 2 162 2105690 2105850 MAG: Nitrospira sp. isolate DJ chromosome blastn 322 231 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
19336872 19336872 PRJNA1098727_P_NODE_12876_length_169_cov_0.866667_g12635_i0 PRJNA1098727 12876 169 0.866667 1.46466723 Nitrospira defluvii 330214 Bacteria Bacteria 176 8.03e-40   NTclustered gi|300603458|emb|FP929003.1| 330214 g12635 i0 87.097 0.917159763313609 155 20 92 0 7 161 3996295 3996141 Candidatus Nitrospira defluvii chromosome, complete genome blastn 155 176 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira defluvii
29057259 29057259 PRJNA1098727_P_NODE_13708_length_167_cov_0.881356_g13467_i0 PRJNA1098727 13708 167 0.881356 1.47186452 Nitrospira sp. CR1.2 2656757 Bacteria Bacteria 117 9.28e-29   NR MBA5875532.1 2656757 g13467 i0 98.2 4.94011976047904 55 1 98.8 0 167 3 268 322 MBA5875532.1 hypothetical protein [Nitrospira sp. CR1.2] diamond 825 117 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp. CR1.2
29499109 29499109 PRJNA1098727_P_NODE_15770_length_162_cov_0.920354_g15529_i0 PRJNA1098727 15770 162 0.920354 1.49097348 Nitrospira sp. 70125 Bacteria Bacteria 65.9 8.64e-11   NR TKS63325.1 70125 g15529 i0 60.4 0.981481481481482 53 21 98.1 0 4 162 219 271 TKS63325.1 MAG: hypothetical protein EWM73_01594 [Nitrospira sp.] diamond 159 65.9 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;