RNAquarium Metadata Server
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contig_metadata

9 rows where bioproject = "PRJNA1098727" and tax_phylum = "Myxococcota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 9 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1098727 · 9 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
211094 211094 PRJNA1098727_P_NODE_13901_length_166_cov_0.888889_g13660_i0 PRJNA1098727 13901 166 0.888889 1.47555574 Polyangiaceae bacterium 2268199 Bacteria Bacteria 85.1 1.71e-18   NR MEZ4439341.1 2268199 g13660 i0 70.4 3.86746987951807 54 16 97.6 0 3 164 51 104 MEZ4439341.1 response regulator transcription factor [Polyangiaceae bacterium] diamond 642 85.1 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
11689823 11689823 PRJNA1098727_P_NODE_13990_length_166_cov_0.888889_g13749_i0 PRJNA1098727 13990 166 0.888889 1.47555574 Sorangium cellulosum 56 Bacteria Bacteria 239 9.94e-59   NTclustered gi|1338588479|gb|CP012673.1| 56 g13749 i0 92.771 126.903614457831 166 10 99 2 2 165 3449385 3449220 Sorangium cellulosum strain So ce26 chromosome, complete genome blastn 21066 239 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Sorangium Sorangium cellulosum
27130444 27130444 PRJNA1098727_P_NODE_14742_length_164_cov_0.904348_g14501_i0 PRJNA1098727 14742 164 0.904348 1.48313072 Myxococcaceae bacterium 2484252 Bacteria Bacteria 101 1.2499999999999999e-23   NR RPH69899.1 2484252 g14501 i0 80.8 1.9390243902439 52 10 95.1 0 163 8 146 197 RPH69899.1 MAG: aminotransferase class III-fold pyridoxal phosphate-dependent enzyme [Myxococcaceae bacterium] diamond 318 101 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae   Myxococcaceae bacterium
28330860 28330860 PRJNA1098727_P_NODE_12466_length_170_cov_2.074380_g12225_i0 PRJNA1098727 12466 170 2.07438 3.526446 Polyangiales bacterium 3034171 Bacteria Bacteria 75.1 5.31e-14   NR MEZ4395120.1 3034171 g12225 i0 100 0.635294117647059 36 0 63.5 0 155 48 463 498 MEZ4395120.1 helix-turn-helix domain-containing protein [Polyangiales bacterium] diamond 108 75.1 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales     Polyangiales bacterium
30636162 30636162 PRJNA1098727_P_NODE_12833_length_169_cov_0.866667_g12592_i0 PRJNA1098727 12833 169 0.866667 1.46466723 Myxococcota bacterium 2818507 Bacteria Bacteria 119 1.44e-29   NR MEZ4280991.1 2818507 g12592 i0 98.2 1.98816568047337 56 1 99.4 0 168 1 214 269 MEZ4280991.1 D-aminoacylase [Myxococcota bacterium] diamond 336 119 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
30731117 30731117 PRJNA1098727_P_NODE_9754_length_194_cov_2.427586_g9513_i0 PRJNA1098727 9754 194 2.427586 4.70951684 Chondromyces sp. 3069217 Bacteria Bacteria 78.6 4.53e-15   NR HSO21770.1 3069217 g9513 i0 97.6 0.649484536082474 42 1 64.9 0 3 128 500 541 HSO21770.1 nucleoside transporter C-terminal domain-containing protein [Chondromyces sp.] diamond 126 78.6 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Chondromyces Chondromyces sp.
31173167 31173167 PRJNA1098727_P_NODE_13135_length_168_cov_0.873950_g12894_i0 PRJNA1098727 13135 168 0.87395 1.468236 Polyangiaceae bacterium 2268199 Bacteria Bacteria 57.4 2.71e-9   NR HMR76826.1 2268199 g12894 i0 92.6 0.482142857142857 27 2 48.2 0 2 82 37 63 HMR76826.1 hypothetical protein [Polyangiaceae bacterium] diamond 81 57.4 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
31837485 31837485 PRJNA1098727_P_NODE_6797_length_239_cov_1.347368_g6556_i0 PRJNA1098727 6797 239 1.347368 3.22020952 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 77 2.95e-14   NR MAW05289.1 2026735 g6556 i0 54.2 0.903765690376569 72 33 90.4 0 4 219 310 381 MAW05289.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 216 77 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
32659606 32659606 PRJNA1098727_P_NODE_13140_length_168_cov_0.873950_g12899_i0 PRJNA1098727 13140 168 0.87395 1.468236 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 52.8 1.82e-6   NR MDO8527081.1 2026735 g12899 i0 47.2 0.946428571428571 53 28 94.6 0 164 6 40 92 MDO8527081.1 DUF366 family protein [Deltaproteobacteria bacterium] diamond 159 52.8 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;