RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA1098727" and tax_phylum = "Ciliophora"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA1098727 · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2761803 2761803 PRJNA1098727_P_NODE_14523_length_165_cov_0.896552_g14282_i0 PRJNA1098727 14523 165 0.896552 1.4793108 Tetrahymena thermophila 5911 SAR_Eukaryotes SAR_Eukaryotes 213 5.98e-51   NTclustered gi|829194196|ref|XM_001025062.3| 312017 g14282 i0 90.244 0.993939393939394 164 15 99 1 2 164 253 90 Tetrahymena thermophila SB210 40S ribosomal protein S24 partial mRNA blastn 164 213 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
6589194 6589194 PRJNA1098727_P_NODE_10806_length_184_cov_1.525926_g10565_i0 PRJNA1098727 10806 184 1.525926 2.80770384 Tetrahymena thermophila 5911 SAR_Eukaryotes SAR_Eukaryotes 309 8.430000000000001e-80   NTclustered gi|829174498|ref|XM_001017626.3| 312017 g10565 i0 97.253 7.92391304347826 182 5 99 0 2 183 511 330 Tetrahymena thermophila SB210 ubiquitin/ribosomal fusion protein, putative partial mRNA blastn 1458 309 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
6589212 6589212 PRJNA1098727_P_NODE_13846_length_166_cov_1.384615_g13605_i0 PRJNA1098727 13846 166 1.384615 2.2984609 Tetrahymena thermophila 5911 SAR_Eukaryotes SAR_Eukaryotes 176 7.91e-40   NTclustered gi|829160192|ref|XM_001012283.3| 312017 g13605 i0 89.362 1.36746987951807 141 13 84 2 2 141 68 207 Tetrahymena thermophila SB210 40S ribosomal protein S28e, putative partial mRNA blastn 227 176 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
7397623 7397623 PRJNA1098727_P_NODE_13706_length_167_cov_0.881356_g13465_i0 PRJNA1098727 13706 167 0.881356 1.47186452 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 307 2.71e-79   NTclustered gi|1621572405|gb|MH051920.1| 5893 g13465 i0 100 99.4011976047904 166 0 99 0 2 167 1280 1445 Tetrahymena borealis strain 1630/5A small subunit ribosomal RNA gene, partial sequence blastn 16600 307 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena borealis
12498631 12498631 PRJNA1098727_P_NODE_14190_length_165_cov_2.189655_g13949_i0 PRJNA1098727 14190 165 2.189655 3.61293075 Vorticella 60849 SAR_Eukaryotes SAR_Eukaryotes 291 2.69e-74   NTclustered gi|115353907|gb|DQ868347.1| 77619 g13949 i0 98.773 99.2181818181818 163 2 99 0 2 164 625 787 Vorticella microstoma 18S small subunit ribosomal RNA gene, partial sequence blastn 16371 291 1 Eukaryota Sar   Ciliophora Oligohymenophorea Sessilida Vorticellidae Vorticella Vorticella microstoma
31647700 31647700 PRJNA1098727_P_NODE_11877_length_175_cov_1.325397_g11636_i0 PRJNA1098727 11877 175 1.325397 2.31944475 Tetrahymena thermophila SB21 5911 SAR_Eukaryotes SAR_Eukaryotes 41.6 0.04   NR XP_001006991.2 312017 g11636 i0 36.2 0.994285714285714 58 37 99.4 0 175 2 2464 2521 XP_001006991.2 bowman-birk serine protease inhibitor family protein [Tetrahymena thermophila SB210] diamond 174 41.6 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;