RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1098727", tax_kingdom = "Pseudomonadati" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 3 ✖

tax_kingdom 1

  • Pseudomonadati · 3 ✖

bioproject 1

  • PRJNA1098727 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28362407 28362407 PRJNA1098727_P_NODE_12566_length_169_cov_9.591667_g12325_i0 PRJNA1098727 12566 169 9.591667 16.20991723 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 42 0.0258   NR NQZ00648.1 2053517 g12325 i0 56.3 0.568047337278107 32 14 56.8 0 38 133 273 304 NQZ00648.1 hypothetical protein [Bdellovibrionales bacterium] diamond 96 42 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
29088803 29088803 PRJNA1098727_P_NODE_14068_length_166_cov_0.888889_g13827_i0 PRJNA1098727 14068 166 0.888889 1.47555574 Bdellovibrio sp. 28-41-41 1970323 Bacteria Bacteria 80.1 8.56e-16   NR OYZ22286.1 1970323 g13827 i0 59.3 0.975903614457831 54 22 97.6 0 164 3 586 639 OYZ22286.1 MAG: hypothetical protein B7Y39_07740 [Bdellovibrio sp. 28-41-41] diamond 162 80.1 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. 28-41-41
29467278 29467278 PRJNA1098727_P_NODE_12810_length_169_cov_0.866667_g12569_i0 PRJNA1098727 12810 169 0.866667 1.46466723 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 100 5.28e-23   NR MEK6773895.1 3034175 g12569 i0 87.3 0.976331360946746 55 7 97.6 0 3 167 20 74 MEK6773895.1 hypothetical protein [Bdellovibrionota bacterium] diamond 165 100 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;