RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1098727", tax_clade = "Sar" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1098727 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1485764 1485764 PRJNA1098727_P_NODE_13662_length_167_cov_0.881356_g13421_i0 PRJNA1098727 13662 167 0.881356 1.47186452 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 300 4.53e-77   NTclustered gi|166046560|emb|CU367677.1| 100861 g13421 i0 99.394 34.5808383233533 165 1 99 0 2 166 191 27 Aphanomyces euteiches cDNA blastn 5775 300 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
4037808 4037808 PRJNA1098727_P_NODE_13324_length_168_cov_0.873950_g13083_i0 PRJNA1098727 13324 168 0.87395 1.468236 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 309 7.58e-80   NTclustered gi|325194231|emb|FR825088.1| 890382 g13083 i0 100 1.46428571428571 167 0 99 0 1 167 1254 1088 Albugo laibachii Nc14, genomic contig CONTIG_1612_NC14_v4_1853_85 blastn 246 309 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
4037850 4037850 PRJNA1098727_P_NODE_9464_length_198_cov_1.040268_g9223_i0 PRJNA1098727 9464 198 1.040268 2.05973064 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 112 1.78e-30   NR KAG1692638.1 4784 g9223 i0 86.2 1089.24242424242 65 9 98.5 0 197 3 29 93 KAG1692638.1 Alpha-glucosides permease mph3, partial [Phytophthora capsici] diamond 215670 112 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora capsici

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;