RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1098727", tax_clade = "Opisthokonta" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 2 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 2 ✖

bioproject 1

  • PRJNA1098727 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26687757 26687757 PRJNA1098727_P_NODE_2701_length_414_cov_3.430137_g2461_i0 PRJNA1098727 2701 414 3.430137 14.20076718 Saccostrea cuccullata 36930 Mollusca Mollusca 46.6 0.0086   NR XP_062599881.1 36930 g2461 i0 32.2 0.427536231884058 59 40 42.8 0 213 389 21 79 XP_062599881.1 uncharacterized protein LOC134261454 [Saccostrea cuccullata] diamond 177 46.6 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Ostreida Ostreidae Saccostrea Saccostrea cuccullata
31521512 31521512 PRJNA1098727_P_NODE_8136_length_216_cov_1.119760_g7895_i0 PRJNA1098727 8136 216 1.11976 2.4186816 Lottia gigantea 225164 Mollusca Mollusca 91.7 5.7500000000000005e-21   NR XP_009049886.1 225164 g7895 i0 68.1 32.6111111111111 69 22 95.8 0 208 2 25 93 XP_009049886.1 hypothetical protein LOTGIDRAFT_178048 [Lottia gigantea] diamond 7044 91.7 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Lottiidae Lottia Lottia gigantea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;