RNAquarium Metadata Server
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contig_metadata

10 rows where bioproject = "PRJNA1098727", tax_clade = "Opisthokonta" and tax_phylum = "Chordata"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chordata · 10 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 10 ✖

bioproject 1

  • PRJNA1098727 · 10 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6589221 6589221 PRJNA1098727_P_NODE_14626_length_164_cov_1.808696_g14385_i0 PRJNA1098727 14626 164 1.808696 2.96626144 Apteryx mantelli 2696672 Chordata Chordata 54.7 0.004   NTclustered gi|840016890|emb|LK066393.1| 202946 g14385 i0 100 0.176829268292683 29 0 18 0 73 101 207577 207549 Apteryx australis mantelli genome assembly AptMant0, scaffold scaffold1803 blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Aves Apterygiformes Apterygidae Apteryx Apteryx mantelli
16788196 16788196 PRJNA1098727_P_NODE_11314_length_179_cov_7.161538_g11073_i0 PRJNA1098727 11314 179 7.161538 12.81915302 Camelus bactrianus 9837 Chordata Chordata 60.2 9.06e-5   NTclustered gi|2165480494|ref|XR_006721483.1| 9837 g11073 i0 97.143 2.21787709497207 35 1 20 0 144 178 1793 1759 PREDICTED: Camelus bactrianus uncharacterized LOC123614016 (LOC123614016), ncRNA blastn 397 60.2 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Camelidae Camelus Camelus bactrianus
21887900 21887900 PRJNA1098727_P_NODE_12718_length_169_cov_0.866667_g12477_i0 PRJNA1098727 12718 169 0.866667 1.46466723 Meleagris gallopavo 9103 Chordata Chordata 292 7.64e-75   NTclustered gi|2721460947|emb|HG999702.4| 9103 g12477 i0 98.78 1.79289940828402 164 2 97 0 1 164 3417222 3417385 Meleagris gallopavo genome assembly, chromosome: 23 blastn 303 292 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Meleagris Meleagris gallopavo
27004261 27004261 PRJNA1098727_P_NODE_5602_length_268_cov_0.831050_g5361_i0 PRJNA1098727 5602 268 0.83105 2.227214 Bufotes viridis 30338 Chordata Chordata 43.5 0.025   NR CAK8629749.1 30338 g5361 i0 66.7 0.57089552238806 30 10 33.6 0 173 84 331 360 CAK8629749.1 Interleukin-1 receptor type 1 [Bufotes viridis] diamond 153 43.5 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufotes Bufotes viridis
27817297 27817297 PRJNA1098727_P_NODE_14664_length_164_cov_1.582609_g14423_i0 PRJNA1098727 14664 164 1.582609 2.59547876 Artiodactyla 91561 Chordata Chordata 58.2 4.63e-8   NR XP_069396403.1 9728 g14423 i0 90.3 2.72560975609756 31 3 56.7 0 161 69 156 186 XP_069396403.1 collagen alpha-1(I) chain-like, partial [Delphinus delphis] diamond 447 58.5 0.994871794871795 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Delphinidae Delphinus Delphinus delphis
27857265 27857265 PRJNA1098727_P_NODE_12885_length_169_cov_0.866667_g12644_i0 PRJNA1098727 12885 169 0.866667 1.46466723 Fukomys damarensis 885580 Chordata Chordata 73.2 2.58e-13   NR XP_033614349.1 885580 g12644 i0 71.4 1.98816568047337 56 16 99.4 0 2 169 1416 1471 XP_033614349.1 multidrug resistance-associated protein 1 isoform X3 [Fukomys damarensis] diamond 336 73.2 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Bathyergidae Fukomys Fukomys damarensis
28638203 28638203 PRJNA1098727_P_NODE_15687_length_162_cov_0.920354_g15446_i0 PRJNA1098727 15687 162 0.920354 1.49097348 Chordata 7711 Chordata Chordata 49.7 2.7e-5   NR KAG2458726.1 55291 g15446 i0 56 21.5185185185185 50 22 92.6 0 159 10 14 63 KAG2458726.1 ORML1 protein, partial [Polypterus senegalus] diamond 3486 49.7 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
32691229 32691229 PRJNA1098727_P_NODE_9740_length_194_cov_3.075862_g9499_i0 PRJNA1098727 9740 194 3.075862 5.96717228 Heterocephalus glaber 10181 Chordata Chordata 43.1 0.0143   NR XP_012924134.2 10181 g9499 i0 58.6 0.448453608247423 29 12 44.8 0 192 106 221 249 XP_012924134.2 LOW QUALITY PROTEIN: zinc finger protein 627-like [Heterocephalus glaber] diamond 87 43.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Bathyergidae Heterocephalus Heterocephalus glaber
32785671 32785671 PRJNA1098727_P_NODE_11500_length_178_cov_1.565891_g11259_i0 PRJNA1098727 11500 178 1.565891 2.78728598 Bufotes viridis 30338 Chordata Chordata 42.4 0.0215   NR CAK8629749.1 30338 g11259 i0 63.3 0.50561797752809 30 11 50.6 0 7 96 331 360 CAK8629749.1 Interleukin-1 receptor type 1 [Bufotes viridis] diamond 90 42.4 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufotes Bufotes viridis
32902982 32902982 PRJNA1098727_P_NODE_9500_length_197_cov_3.040541_g9259_i0 PRJNA1098727 9500 197 3.040541 5.98986577 Lamniformes 30496 Chordata Chordata 46.6 8.78e-4   NR XP_041068779.1 13397 g9259 i0 65.5 1.30964467005076 29 10 44.2 0 106 20 443 471 XP_041068779.1 homeobox protein Meis1a isoform X4 [Carcharodon carcharias] diamond 258 47 0.991489361702128 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Lamniformes Alopiidae Carcharodon Carcharodon carcharias

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;