RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA1098727" and tax_clade = "Amoebozoa"

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tax_phylum 2

analysis 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 5 ✖

bioproject 1

  • PRJNA1098727 · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2761801 2761801 PRJNA1098727_P_NODE_14403_length_165_cov_0.896552_g14162_i0 PRJNA1098727 14403 165 0.896552 1.4793108 Didymium iridis 5793 Evosea other_Eukaryota 291 2.69e-74   NTclustered gi|2687|emb|X60210.1| 5793 g14162 i0 98.78 11.5151515151515 164 0 99 1 1 164 1420 1259 D.iridis LSU rRNA gene blastn 1900 291 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Didymium Didymium iridis
9947978 9947978 PRJNA1098727_P_NODE_12628_length_169_cov_1.716667_g12387_i0 PRJNA1098727 12628 169 1.716667 2.90116723 Acanthamoebidae 33677 Discosea other_Eukaryota 287 3.55e-73   NTclustered gi|2979663|gb|AF019063.1|AF019063 28015 g12387 i0 97.605 89.810650887574 167 4 99 0 2 168 751 917 Acanthamoeba palestinensis 2802 18S ribosomal RNA gene, partial sequence blastn 15178 287 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba palestinensis
19336913 19336913 PRJNA1098727_P_NODE_9176_length_201_cov_3.013158_g8935_i0 PRJNA1098727 9176 201 3.013158 6.05644758 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 235 1.62e-57   NTclustered gi|300078498|gb|GU001160.1| 5755 g8935 i0 94.771 0.761194029850746 153 5 75 3 1 151 5926 5775 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 153 235 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27383821 27383821 PRJNA1098727_P_NODE_7623_length_224_cov_0.874286_g7382_i0 PRJNA1098727 7623 224 0.874286 1.95840064 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 42.4 0.0408   NR XP_004339867.1 1257118 g7382 i0 32.9 0.977678571428571 73 44 91.1 3 18 221 426 498 XP_004339867.1 Fbox domain containing protein [Acanthamoeba castellanii str. Neff] diamond 219 42.4 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30320948 30320948 PRJNA1098727_P_NODE_13272_length_168_cov_0.873950_g13031_i0 PRJNA1098727 13272 168 0.87395 1.468236 Dictyostelium purpureum 5786 Evosea other_Eukaryota 59.3 1.26e-8   NR XP_003294366.1 5786 g13031 i0 43.6 0.982142857142857 55 31 98.2 0 2 166 168 222 XP_003294366.1 uncharacterized protein DICPUDRAFT_43294 [Dictyostelium purpureum] diamond 165 59.3 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;