RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1097627", tax_kingdom = "Pseudomonadati" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 3 ✖

tax_kingdom 1

  • Pseudomonadati · 3 ✖

bioproject 1

  • PRJNA1097627 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
23158796 23158796 PRJNA1097627_P_NODE_191779_length_243_cov_0.905882_g191486_i0 PRJNA1097627 191779 243 0.905882 2.20129326 Hyalangium minutum 394096 Bacteria Bacteria 166 7.37e-47   NR WP_044188534.1 394096 g191486 i0 98.8 1 81 1 100 0 1 243 360 440 WP_044188534.1 alkaline phosphatase D family protein [Hyalangium minutum] diamond 243 166 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Hyalangium Hyalangium minutum
26624420 26624420 PRJNA1097627_P_NODE_164581_length_247_cov_0.885057_g164288_i0 PRJNA1097627 164581 247 0.885057 2.18609079 Nannocystis sp. 1962667 Bacteria Bacteria 110 7.77e-26   NR WP_293272112.1 1962667 g164288 i0 67.1 0.995951417004049 82 27 99.6 0 1 246 262 343 WP_293272112.1 DUF1592 domain-containing protein [Nannocystis sp.] diamond 246 110 1 Bacteria   Pseudomonadati Myxococcota   Nannocystales Nannocystaceae Nannocystis Nannocystis sp.
26846393 26846393 PRJNA1097627_P_NODE_101341_length_273_cov_1.060000_g101048_i0 PRJNA1097627 101341 273 1.06 2.8938 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 43.1 0.0343   NR MDR0621208.1 2026735 g101048 i0 40.8 0.538461538461538 49 26 50.5 2 230 93 175 223 MDR0621208.1 aspartate/glutamate racemase family protein [Deltaproteobacteria bacterium] diamond 147 43.1 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;