RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1097627" and tax_kingdom = "Pararnavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 4 ✖

bioproject 1

  • PRJNA1097627 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11689378 11689378 PRJNA1097627_P_NODE_90_length_4234_cov_5.235520_g7_i1 PRJNA1097627 90 4234 5.23552 221.6719168 Gammaretrovirus murleu 3428959 Viruses Viruses 7529 0   NTclustered gi|1071348744|gb|KX173421.1| 11786 g7 i1 98.663 99.371280113368 4262 29 100 10 1 4234 2545 6806 Murine leukemia virus clone 26, complete sequence blastn 420738 7529 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
14233202 14233202 PRJNA1097627_P_NODE_148692_length_250_cov_0.870056_g148399_i0 PRJNA1097627 148692 250 0.870056 2.17514 Gammaretrovirus gibleu 3428953 Viruses Viruses 462 8.83e-126   NTclustered gi|971888245|gb|KT724047.1| 11840 g148399 i0 100 94.592 250 0 100 0 1 250 5851 6100 Gibbon ape leukemia virus strain San Francisco, complete genome blastn 23648 462 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus gibleu
18058130 18058130 PRJNA1097627_P_NODE_18975_length_382_cov_1.067961_g18684_i0 PRJNA1097627 18975 382 1.067961 4.07961102 Gammaretrovirus gibleu 3428953 Viruses Viruses 699 0   NTclustered gi|971888245|gb|KT724047.1| 11840 g18684 i0 99.738 27.2879581151832 382 0 100 1 1 382 7981 7601 Gibbon ape leukemia virus strain San Francisco, complete genome blastn 10424 699 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus gibleu
22696678 22696678 PRJNA1097627_P_NODE_149258_length_249_cov_2.482955_g148965_i0 PRJNA1097627 149258 249 2.482955 6.18255795 root 1 Root_unresolved Root_unresolved 460 3.16e-125   NTclustered gi|332105|gb|L01464.1|MMTGAGPRO 11757 g148965 i0 100 26.5261044176707 249 0 100 0 1 249 391 143 Mouse mammary tumor virus protease (pro) gene, 3' end blastn 6605 460 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus murmamtum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;