RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1097627", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 2 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA1097627 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14235251 14235251 PRJNA1097627_P_NODE_191172_length_243_cov_0.905882_g190879_i0 PRJNA1097627 191172 243 0.905882 2.20129326 Roseimicrobium sp. ORNL1 2711231 Bacteria Bacteria 250 7.2399999999999995e-62   NTclustered gi|1815841271|gb|CP049143.1| 2711231 g190879 i0 89.744 0.802469135802469 195 20 80 0 49 243 5290577 5290771 Roseimicrobium sp. ORNL1 chromosome, complete genome blastn 195 250 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Roseimicrobium Roseimicrobium sp. ORNL1
31110111 31110111 PRJNA1097627_P_NODE_204495_length_241_cov_0.916667_g204202_i0 PRJNA1097627 204495 241 0.916667 2.20916747 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 76.6 4.24e-14   NR MEM9400762.1 2026799 g204202 i0 60 0.684647302904564 55 22 68.5 0 172 8 671 725 MEM9400762.1 reverse transcriptase domain-containing protein [Verrucomicrobiota bacterium] diamond 165 76.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;