RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1097627", tax_clade = "Opisthokonta" and tax_phylum = "Platyhelminthes"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 4 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 4 ✖

bioproject 1

  • PRJNA1097627 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16783211 16783211 PRJNA1097627_P_NODE_183614_length_244_cov_0.900585_g183321_i0 PRJNA1097627 183614 244 0.900585 2.1974274 Spirometra erinaceieuropaei 99802 Platyhelminthes Platyhelminthes 75 4.7e-9   NTclustered gi|690606411|emb|LN160967.1| 99802 g183321 i0 85.714 0.315573770491803 77 3 31 7 7 81 1435 1365 Spirometra erinaceieuropaei genome assembly S_erinaceieuropaei ,scaffold SPER_scaffold0144352 blastn 77 75 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Diphyllobothriidea Diphyllobothriidae Spirometra Spirometra erinaceieuropaei
22696657 22696657 PRJNA1097627_P_NODE_11458_length_421_cov_1.298851_g11169_i0 PRJNA1097627 11458 421 1.298851 5.46816271 Metazoa 33208 Platyhelminthes Platyhelminthes 761 0   NTclustered gi|1114672553|gb|AF016899.2| 6183 g11169 i0 99.287 92.9928741092637 421 3 100 0 1 421 1375 955 Schistosoma mansoni alpha-(1,3)-fucosyltransferase VII (SmFuct) mRNA, complete cds blastn 39150 761 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma mansoni
28922023 28922023 PRJNA1097627_P_NODE_187828_length_243_cov_0.905882_g187535_i0 PRJNA1097627 187828 243 0.905882 2.20129326 Metazoa 33208 Platyhelminthes Platyhelminthes 46.2 0.00227   NR KAH9287141.1 6210 g187535 i0 77.3 3.44444444444444 22 5 27.2 0 5 70 2194 2215 KAH9287141.1 Phosphatidylinositol 4-kinase alpha [Echinococcus granulosus] diamond 837 46.2 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Cyclophyllidea Taeniidae Echinococcus Echinococcus granulosus
30572923 30572923 PRJNA1097627_P_NODE_203253_length_241_cov_0.916667_g202960_i0 PRJNA1097627 203253 241 0.916667 2.20916747 Protopolystoma xenopodis 117903 Platyhelminthes Platyhelminthes 41.2 0.0243   NR VEL37994.1 117903 g202960 i0 78.3 0.286307053941909 23 5 28.6 0 230 162 61 83 VEL37994.1 unnamed protein product [Protopolystoma xenopodis] diamond 69 41.2 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Monogenea Polystomatidea Polystomatidae Protopolystoma Protopolystoma xenopodis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;