RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA1095825" and tax_phylum = "Heterolobosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA1095825 · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4027789 4027789 PRJNA1095825_P_NODE_288144_length_242_cov_0.911243_g285081_i0 PRJNA1095825 288144 242 0.911243 2.20520806 Naegleria sp. 37103 Heterolobosea other_Eukaryota 448 2.3799999999999995e-121   NTclustered gi|2651357798|gb|PP174311.1| 37103 g285081 i0 100 11.9876033057851 242 0 100 0 1 242 3767 3526 Naegleria sp. isolate 33 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 2901 448 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria sp.
20600585 20600585 PRJNA1095825_P_NODE_103757_length_374_cov_1.408638_g100694_i0 PRJNA1095825 103757 374 1.408638 5.26830612 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 52.8 0.036   NTclustered gi|2031946548|emb|OD958517.1| 5763 g100694 i0 100 0.0748663101604278 28 0 7 0 347 374 28 1 Naegleria fowleri Karachi_NF001 strain blastn 28 52.8 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
23153458 23153458 PRJNA1095825_P_NODE_296719_length_241_cov_0.916667_g293656_i0 PRJNA1095825 296719 241 0.916667 2.20916747 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 54.7 0.006   NTclustered gi|2031937359|emb|OD957219.1| 5763 g293656 i0 100 0.120331950207469 29 0 12 0 1 29 2 30 Naegleria fowleri Karachi_NF001 strain blastn 29 54.7 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
30289170 30289170 PRJNA1095825_P_NODE_197072_length_278_cov_4.882927_g194009_i0 PRJNA1095825 197072 278 4.882927 13.57453706 Acrasis kona 1008807 Heterolobosea other_Eukaryota 77.8 4.23e-16   NR KAL0490923.1 1008807 g194009 i0 44.4 1.76978417266187 81 37 87.4 1 245 3 13 85 KAL0490923.1 ribosomal protein S20 [Acrasis kona] diamond 492 77.8 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis kona
30794216 30794216 PRJNA1095825_P_NODE_221534_length_261_cov_1.452128_g218471_i0 PRJNA1095825 221534 261 1.452128 3.79005408 Naegleria lovaniensis 51637 Heterolobosea other_Eukaryota 81.3 1.26e-15   NR XP_044548198.1 51637 g218471 i0 61.2 1.59770114942529 67 24 75.9 2 57 254 420 485 XP_044548198.1 uncharacterized protein C9374_005099 [Naegleria lovaniensis] diamond 417 81.3 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria lovaniensis
32754324 32754324 PRJNA1095825_P_NODE_289200_length_242_cov_0.911243_g286137_i0 PRJNA1095825 289200 242 0.911243 2.20520806 Acrasis kona 1008807 Heterolobosea other_Eukaryota 91.3 1.6e-19   NR KAL0488256.1 1008807 g286137 i0 53.8 0.991735537190083 80 36 99.2 1 1 240 106 184 KAL0488256.1 esterase [Acrasis kona] diamond 240 91.3 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis kona

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;