RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA1095825" and tax_phylum = "Discosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Discosea · 7 ✖

tax_clade 1

bioproject 1

  • PRJNA1095825 · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7854471 7854471 PRJNA1095825_P_NODE_86487_length_407_cov_11.167665_g83424_i0 PRJNA1095825 86487 407 11.167665 45.45239655 Vannella septentrionalis 197531 Discosea other_Eukaryota 549 1.1399999999999994e-151   NTclustered gi|300078499|gb|GU001161.1| 197531 g83424 i0 90.909 94.7321867321867 418 25 100 11 1 407 3829 3414 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 38556 549 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
9128025 9128025 PRJNA1095825_P_NODE_208228_length_271_cov_1.116162_g205165_i0 PRJNA1095825 208228 271 1.116162 3.02479902 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 398 2.7699999999999993e-106   NTclustered gi|300078498|gb|GU001160.1| 5755 g205165 i0 92.657 17.9151291512915 286 5 100 12 1 271 6182 6466 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 4855 398 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
13773010 13773010 PRJNA1095825_P_NODE_45011_length_572_cov_15.981964_g41960_i0 PRJNA1095825 45011 572 15.981964 91.41683408 Vannella 95228 Discosea other_Eukaryota 1027 0   NTclustered gi|62865934|gb|AY929909.1| 325075 g41960 i0 99.126 99.1695804195804 572 4 100 1 1 572 15 585 Vannella sp. strain 4362V/II 18S small subunit ribosomal RNA gene, partial sequence blastn 56725 1035 0.992270531400966 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. strain 4362V/II
19325679 19325679 PRJNA1095825_P_NODE_159436_length_309_cov_1.271186_g156373_i0 PRJNA1095825 159436 309 1.271186 3.92796474 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 460 4.05e-125   NTclustered gi|300078498|gb|GU001160.1| 5755 g156373 i0 93.354 1.02265372168285 316 14 100 5 1 309 5926 5611 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 316 460 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
21877528 21877528 PRJNA1095825_P_NODE_245018_length_250_cov_0.870056_g241955_i0 PRJNA1095825 245018 250 0.870056 2.17514 Ripella platypodia 2047821 Discosea other_Eukaryota 398 2.5199999999999997e-106   NTclustered gi|1269228347|gb|MF683472.1| 2047821 g241955 i0 95.294 99.868 255 5 100 5 1 250 399 147 Ripella platypodia clone 21701 18S ribosomal RNA gene, partial sequence blastn 24967 398 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella platypodia
29499086 29499086 PRJNA1095825_P_NODE_216110_length_265_cov_1.250000_g213047_i0 PRJNA1095825 216110 265 1.25 3.3125 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 44.3 0.0139   NR XP_004352093.1 1257118 g213047 i0 45.9 0.418867924528302 37 20 41.9 0 191 81 237 273 XP_004352093.1 peptidase, S8/S53 subfamily protein [Acanthamoeba castellanii str. Neff] diamond 111 44.3 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32027535 32027535 PRJNA1095825_P_NODE_238958_length_251_cov_0.865169_g235895_i0 PRJNA1095825 238958 251 0.865169 2.17157419 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 53.5 6.29e-6   NR XP_004338083.1 1257118 g235895 i0 36.8 0.908366533864542 76 48 90.8 0 250 23 130 205 XP_004338083.1 cytidyltransferaserelated domain containing protein [Acanthamoeba castellanii str. Neff] diamond 228 53.5 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;