RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1095825" and tax_phylum = "Chlorobiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlorobiota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1095825 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29901120 29901120 PRJNA1095825_P_NODE_283391_length_243_cov_0.905882_g280328_i0 PRJNA1095825 283391 243 0.905882 2.20129326 Chlorobium 1091 Bacteria Bacteria 59.7 3.94e-8   NR WP_011746217.1 1096 g280328 i0 45.5 4.16049382716049 55 30 67.9 0 49 213 419 473 WP_011746217.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB [Chlorobium phaeobacteroides] diamond 1011 59.7 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobium Chlorobium phaeobacteroides
32502352 32502352 PRJNA1095825_P_NODE_288699_length_242_cov_0.911243_g285636_i0 PRJNA1095825 288699 242 0.911243 2.20520806 Chlorobium sp. 1095 Bacteria Bacteria 86.3 1.82e-18   NR WP_292004042.1 1095 g285636 i0 86.5 0.644628099173554 52 7 64.5 0 240 85 186 237 WP_292004042.1 diacylglycerol/polyprenol kinase family protein [Chlorobium sp.] diamond 156 86.3 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobium Chlorobium sp.
32565675 32565675 PRJNA1095825_P_NODE_250779_length_249_cov_0.875000_g247716_i0 PRJNA1095825 250779 249 0.875 2.17875 Chlorobium sp. 1095 Bacteria Bacteria 144 2.73e-39   NR WP_331561023.1 1095 g247716 i0 84.1 0.987951807228916 82 13 98.8 0 248 3 149 230 WP_331561023.1 glutamate-5-semialdehyde dehydrogenase [Chlorobium sp.] diamond 246 144 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobium Chlorobium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;