RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1095825", tax_clade = "Sar" and tax_phylum = "Endomyxa"

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tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1095825 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1019579 1019579 PRJNA1095825_P_NODE_37201_length_638_cov_2.623009_g34170_i0 PRJNA1095825 37201 638 2.623009 16.73479742 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 225 3.9e-71   NR CEP02281.1 37360 g34170 i0 60.9 4.80094043887147 202 76 95 2 636 31 3 201 CEP02281.1 hypothetical protein PBRA_008865 [Plasmodiophora brassicae] diamond 3063 225 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
28583694 28583694 PRJNA1095825_P_NODE_295547_length_241_cov_0.916667_g292484_i0 PRJNA1095825 295547 241 0.916667 2.20916747 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 55.5 6.37e-7   NR CEP03618.1 37360 g292484 i0 42 0.858921161825726 69 38 83.4 2 237 37 138 206 CEP03618.1 hypothetical protein PBRA_009503 [Plasmodiophora brassicae] diamond 207 55.5 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;