RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where bioproject = "PRJNA1095825", tax_clade = "PVC group" and tax_phylum = "Candidatus Omnitrophota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Omnitrophota · 7 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 7 ✖

bioproject 1

  • PRJNA1095825 · 7 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27320585 27320585 PRJNA1095825_P_NODE_261963_length_247_cov_0.885057_g258900_i0 PRJNA1095825 261963 247 0.885057 2.18609079 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 50.8 1.91e-5   NR MDD4939002.1 2035772 g258900 i0 91.7 1.23886639676113 24 2 29.1 0 3 74 137 160 MDD4939002.1 adenosine-specific kinase [Candidatus Omnitrophota bacterium] diamond 306 50.8 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
28046732 28046732 PRJNA1095825_P_NODE_248005_length_249_cov_0.875000_g244942_i0 PRJNA1095825 248005 249 0.875 2.17875 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 102 1.37e-24   NR NTV28469.1 2035772 g244942 i0 62.7 0.903614457831325 75 28 90.4 0 20 244 60 134 NTV28469.1 hypothetical protein [Candidatus Omnitrophota bacterium] diamond 225 102 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
28299278 28299278 PRJNA1095825_P_NODE_203606_length_274_cov_1.208955_g200543_i0 PRJNA1095825 203606 274 1.208955 3.3125367 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 130 1.04e-34   NR MEI8344770.1 2035772 g200543 i0 71.4 0.91970802919708 84 24 92 0 22 273 26 109 MEI8344770.1 hypothetical protein [Candidatus Omnitrophota bacterium] diamond 252 130 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
28709985 28709985 PRJNA1095825_P_NODE_205867_length_272_cov_1.547739_g202804_i0 PRJNA1095825 205867 272 1.547739 4.20985008 Candidatus Omnitrophica bacterium CG 2035772 Bacteria Bacteria 82 7.93e-16   NR PIU40227.1 1974742 g202804 i0 46.5 2.85661764705882 86 46 94.9 0 270 13 109 194 PIU40227.1 MAG: DNA primase [Candidatus Omnitrophica bacterium CG07_land_8_20_14_0_80_50_8] diamond 777 82 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophica bacterium CG07_land_8_20_14_0_80_50_8
29183602 29183602 PRJNA1095825_P_NODE_207769_length_271_cov_1.297980_g204706_i0 PRJNA1095825 207769 271 1.29798 3.5175258 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 74.3 4.24e-13   NR HAJ56360.1 2035772 g204706 i0 75 0.487084870848708 44 11 48.7 0 2 133 3526 3569 HAJ56360.1 hypothetical protein [Candidatus Omnitrophota bacterium] diamond 132 74.3 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
30984061 30984061 PRJNA1095825_P_NODE_233434_length_252_cov_2.502793_g230371_i0 PRJNA1095825 233434 252 2.502793 6.30703836 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 62.4 1.26e-9   NR MBI4431446.1 2035772 g230371 i0 64.6 0.571428571428571 48 17 57.1 0 251 108 141 188 MBI4431446.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [Candidatus Omnitrophota bacterium] diamond 144 62.4 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
31860436 31860436 PRJNA1095825_P_NODE_273857_length_245_cov_0.895349_g270794_i0 PRJNA1095825 273857 245 0.895349 2.19360505 Bacteria 2 Bacteria Bacteria 162 7.12e-46   NR PIV11955.1 1974740 g270794 i0 91.4 5.95102040816327 81 7 99.2 0 3 245 81 161 PIV11955.1 MAG: hypothetical protein COS48_03305, partial [Candidatus Omnitrophica bacterium CG03_land_8_20_14_0_80_43_22] diamond 1458 162 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophica bacterium CG03_land_8_20_14_0_80_43_22

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;