RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1095825", tax_clade = "FCB group" and tax_phylum = "Candidatus Fermentibacterota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Candidatus Fermentibacterota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA1095825 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15503520 15503520 PRJNA1095825_P_NODE_257093_length_248_cov_0.880000_g254030_i0 PRJNA1095825 257093 248 0.88 2.1824 Candidatus Fermentibacter daniensis 2152900 Bacteria Bacteria 122 1.61e-30   NR KZD15433.1 1729713 g254030 i0 84.7 0.870967741935484 72 11 87.1 0 246 31 403 474 KZD15433.1 MAG: ATP synthase subunit beta [Candidatus Fermentibacter daniensis] diamond 216 122 1 Bacteria FCB group Pseudomonadati Candidatus Fermentibacterota Candidatus Fermentibacteria Candidatus Fermentibacterales Candidatus Fermentibacteraceae Candidatus Fermentibacter Candidatus Fermentibacter danicus
20602174 20602174 PRJNA1095825_P_NODE_279257_length_244_cov_0.900585_g276194_i0 PRJNA1095825 279257 244 0.900585 2.1974274 Candidatus Fermentibacterota bacterium 2044591 Bacteria Bacteria 127 3.82e-32   NR NLP04747.1 2044591 g276194 i0 81.1 0.909836065573771 74 14 91 0 244 23 330 403 NLP04747.1 phosphoenolpyruvate--protein phosphotransferase [Candidatus Fermentibacterota bacterium] diamond 222 127 1 Bacteria FCB group Pseudomonadati Candidatus Fermentibacterota         Candidatus Fermentibacterota bacterium
24426200 24426200 PRJNA1095825_P_NODE_203040_length_274_cov_1.532338_g199977_i0 PRJNA1095825 203040 274 1.532338 4.19860612 Candidatus Fermentibacterota bacterium 2044591 Bacteria Bacteria 174 5.15e-39   NTclustered gi|2874254046|emb|OY970370.1| 2044591 g199977 i0 79.447 0.923357664233577 253 46 91 6 1 250 744192 744441 MAG: Candidatus Fermentibacteria bacterium isolate MFD00905.bin.1.36 genome assembly, chromosome: 1 blastn 253 174 1 Bacteria FCB group Pseudomonadati Candidatus Fermentibacterota         Candidatus Fermentibacterota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;