RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA1093380" and tax_phylum = "Gemmatimonadota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1093380 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2749909 2749909 PRJNA1093380_P_NODE_5903_length_286_cov_1.230047_g5797_i0 PRJNA1093380 5903 286 1.230047 3.51793442 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 272 1.86e-68   NTclustered gi|575456455|gb|CP007128.1| 861299 g5797 i0 87.607 16.2062937062937 234 29 82 0 2 235 4372438 4372671 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 4635 272 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
15501742 15501742 PRJNA1093380_P_NODE_11873_length_251_cov_1.308989_g11767_i0 PRJNA1093380 11873 251 1.308989 3.28556239 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 318 2.03e-82   NTclustered gi|2874253938|emb|OY970263.1| 412054 g11767 i0 89.412 71.7729083665339 255 23 100 4 1 251 801430 801176 MAG: uncultured Gemmatimonadales bacterium isolate MFD02416.bin.2.26 genome assembly, chromosome: 1 blastn 18015 318 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
16776222 16776222 PRJNA1093380_P_NODE_16434_length_242_cov_0.911243_g16328_i0 PRJNA1093380 16434 242 0.911243 2.20520806 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 241 4.33e-59   NTclustered gi|2874253938|emb|OY970263.1| 412054 g16328 i0 84.774 534.380165289256 243 33 100 4 1 242 803096 802857 MAG: uncultured Gemmatimonadales bacterium isolate MFD02416.bin.2.26 genome assembly, chromosome: 1 blastn 129320 241 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
27067506 27067506 PRJNA1093380_P_NODE_13062_length_249_cov_0.875000_g12956_i0 PRJNA1093380 13062 249 0.875 2.17875 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 60.1 2.99e-8   NR MBI4521371.1 2026742 g12956 i0 64.1 0.469879518072289 39 14 47 0 119 3 3 41 MBI4521371.1 amidase [Gemmatimonadota bacterium] diamond 117 60.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;