RNAquarium Metadata Server
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contig_metadata

13 rows where bioproject = "PRJNA1093380" and tax_phylum = "Ciliophora"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 13 ✖

tax_clade 1

bioproject 1

  • PRJNA1093380 · 13 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3569771 3569771 PRJNA1093380_P_NODE_15083_length_245_cov_0.895349_g14977_i0 PRJNA1093380 15083 245 0.895349 2.19360505 Tetrahymena thermophila SB21 5911 SAR_Eukaryotes SAR_Eukaryotes 127 2.46e-34   NR XP_001026209.2 312017 g14977 i0 69.1 5.95102040816327 81 25 99.2 0 1 243 22 102 XP_001026209.2 casein kinase II beta chain, putative [Tetrahymena thermophila SB210] diamond 1458 127 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
11677781 11677781 PRJNA1093380_P_NODE_2530_length_368_cov_1.542373_g2424_i0 PRJNA1093380 2530 368 1.542373 5.67593264 Isotricha intestinalis 47897 SAR_Eukaryotes SAR_Eukaryotes 235 3.23e-57   NTclustered gi|92790151|emb|AJ965261.1| 47897 g2424 i0 85.841 63.0815217391304 226 26 61 6 145 368 915 694 Isotricha intestinalis partial mRNA for Polyubiqutin 1 (polyubiqutin 1 gene) blastn 23214 235 1 Eukaryota Sar   Ciliophora Litostomatea Vestibuliferida Isotrichidae Isotricha Isotricha intestinalis
12952894 12952894 PRJNA1093380_P_NODE_17811_length_228_cov_3.561290_g17705_i0 PRJNA1093380 17811 228 3.56129 8.1197412 Chilodonella uncinata 151077 SAR_Eukaryotes SAR_Eukaryotes 303 5.08e-78   NTclustered gi|158347525|gb|EU047814.1| 151077 g17705 i0 91.071 97.5833333333333 224 20 98 0 2 225 16 239 Chilodonella uncinata clone Shared_P1 beta-tubulin gene, partial cds; macronuclear blastn 22249 303 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella uncinata
25245570 25245570 PRJNA1093380_P_NODE_1500_length_453_cov_2.810526_g1395_i0 PRJNA1093380 1500 453 2.810526 12.73168278 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 407 8.129999999999999e-109   NTclustered gi|161734|gb|L01415.1|TETBTUBUA 5911 g1395 i0 83.002 95.9911699779249 453 73 99 4 3 453 950 1400 Tetrahymena thermophila beta-tubulin (BTU1) gene, complete cds blastn 43484 407 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
26655856 26655856 PRJNA1093380_P_NODE_8621_length_270_cov_1.248731_g8515_i0 PRJNA1093380 8621 270 1.248731 3.3715737 Pseudocohnilembus persalinus 266149 SAR_Eukaryotes SAR_Eukaryotes 79 9.6e-15   NR KRX10060.1 266149 g8515 i0 47.1 0.966666666666667 87 46 96.7 0 268 8 1383 1469 KRX10060.1 P-loop containing nucleoside triphosphate hydrolase [Pseudocohnilembus persalinus] diamond 261 79 1 Eukaryota Sar   Ciliophora Oligohymenophorea Philasterida Pseudocohnilembidae Pseudocohnilembus Pseudocohnilembus persalinus
27004215 27004215 PRJNA1093380_P_NODE_16922_length_241_cov_0.916667_g16816_i0 PRJNA1093380 16922 241 0.916667 2.20916747 Chilodonella uncinata 151077 SAR_Eukaryotes SAR_Eukaryotes 135 1.71e-37   NR AIE77207.1 151077 g16816 i0 81 0.983402489626556 79 15 98.3 0 3 239 39 117 AIE77207.1 protein kinase domain containing protein, partial [Chilodonella uncinata] diamond 237 135 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella uncinata
27825830 27825830 PRJNA1093380_P_NODE_8424_length_271_cov_1.252525_g8318_i0 PRJNA1093380 8424 271 1.252525 3.39434275 Halteria grandinella 5974 SAR_Eukaryotes SAR_Eukaryotes 91.3 3.07e-19   NR TNV78929.1 5974 g8318 i0 47.8 0.996309963099631 90 43 99.6 1 270 1 285 370 TNV78929.1 hypothetical protein FGO68_gene5820 [Halteria grandinella] diamond 270 91.3 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Halteriidae Halteria Halteria grandinella
28299264 28299264 PRJNA1093380_P_NODE_7686_length_275_cov_1.351485_g7580_i0 PRJNA1093380 7686 275 1.351485 3.71658375 Ichthyophthirius multifiliis 5932 SAR_Eukaryotes SAR_Eukaryotes 78.6 1.65e-16   NR XP_004025094.1 5932 g7580 i0 55.3 3.24 76 34 82.9 0 253 26 1 76 XP_004025094.1 hypothetical protein IMG5_192460 [Ichthyophthirius multifiliis] diamond 891 78.6 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida   Ichthyophthirius Ichthyophthirius multifiliis
28836029 28836029 PRJNA1093380_P_NODE_3428_length_331_cov_0.883721_g3322_i0 PRJNA1093380 3428 331 0.883721 2.92511651 Pseudocohnilembus persalinus 266149 SAR_Eukaryotes SAR_Eukaryotes 79.3 7.31e-15   NR KRX10699.1 266149 g3322 i0 43.6 0.996978851963746 110 57 97 3 6 326 32 139 KRX10699.1 hypothetical protein PPERSA_08694 [Pseudocohnilembus persalinus] diamond 330 79.3 1 Eukaryota Sar   Ciliophora Oligohymenophorea Philasterida Pseudocohnilembidae Pseudocohnilembus Pseudocohnilembus persalinus
29972806 29972806 PRJNA1093380_P_NODE_5691_length_287_cov_1.429907_g5585_i0 PRJNA1093380 5691 287 1.429907 4.10383309 Paramecium tetraurelia 5888 SAR_Eukaryotes SAR_Eukaryotes 141 9.22e-37   NR XP_001441123.1 5888 g5585 i0 63.5 1.98606271777003 96 34 99.3 1 286 2 376 471 XP_001441123.1 uncharacterized protein GSPATT00009998001 [Paramecium tetraurelia] diamond 570 141 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium tetraurelia
30099039 30099039 PRJNA1093380_P_NODE_17672_length_231_cov_3.835443_g17566_i0 PRJNA1093380 17672 231 3.835443 8.85987333 Tetrahymena thermophila SB21 5911 SAR_Eukaryotes SAR_Eukaryotes 90.5 1.58e-19   NR XP_001030010.2 312017 g17566 i0 57.1 3 77 33 100 0 231 1 35 111 XP_001030010.2 casein kinase [Tetrahymena thermophila SB210] diamond 693 90.5 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
30690788 30690788 PRJNA1093380_P_NODE_10113_length_261_cov_1.638298_g10007_i0 PRJNA1093380 10113 261 1.638298 4.27595778 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 84.3 1.88e-17   NR CDW87254.1 5949 g10007 i0 48.8 13.7011494252874 84 42 96.6 1 254 3 14 96 CDW87254.1 40s ribosomal protein s6 [Stylonychia lemnae] diamond 3576 84.3 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Stylonychia Stylonychia lemnae
32113853 32113853 PRJNA1093380_P_NODE_17038_length_241_cov_0.916667_g16932_i0 PRJNA1093380 17038 241 0.916667 2.20916747 Tetrahymenidae 291294 SAR_Eukaryotes SAR_Eukaryotes 68.2 3.98e-11   NR XP_004030812.1 5932 g16932 i0 39.7 2.80082987551867 73 42 88.4 1 240 28 283 355 XP_004030812.1 TRM1 tRNA methyltransferase 1, putative [Ichthyophthirius multifiliis] diamond 675 68.2 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida   Ichthyophthirius Ichthyophthirius multifiliis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;