RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1093380", tax_kingdom = "Pseudomonadati" and tax_phylum = "Abditibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Abditibacteriota · 3 ✖

tax_kingdom 1

  • Pseudomonadati · 3 ✖

bioproject 1

  • PRJNA1093380 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2749790 2749790 PRJNA1093380_P_NODE_12703_length_249_cov_5.664773_g12597_i0 PRJNA1093380 12703 249 5.664773 14.10528477 Abditibacteriota bacterium 2783868 Bacteria Bacteria 220 5.84e-53   NTclustered gi|2215576334|dbj|AP024152.1| 2783868 g12597 i0 82.8 412.409638554217 250 39 99 4 1 248 2850725 2850972 Abditibacteriota bacterium IAD-21 DNA, complete genome blastn 102690 220 1 Bacteria   Pseudomonadati Abditibacteriota         Abditibacteriota bacterium
6577158 6577158 PRJNA1093380_P_NODE_786_length_629_cov_1.239209_g684_i0 PRJNA1093380 786 629 1.239209 7.79462461 Abditibacteriota bacterium 2783868 Bacteria Bacteria 492 3.099999999999999e-134   NTclustered gi|2215576334|dbj|AP024152.1| 2783868 g684 i0 83.363 211.502384737679 553 71 86 18 88 629 2852614 2852072 Abditibacteriota bacterium IAD-21 DNA, complete genome blastn 133035 492 1 Bacteria   Pseudomonadati Abditibacteriota         Abditibacteriota bacterium
15501844 15501844 PRJNA1093380_P_NODE_393_length_901_cov_6.995169_g305_i0 PRJNA1093380 393 901 6.995169 63.02647269 Abditibacteriota bacterium 2783868 Bacteria Bacteria 1040 0   NTclustered gi|2215576334|dbj|AP024152.1| 2783868 g305 i0 88.555 209.18756936737 865 89 96 9 9 869 2851049 2851907 Abditibacteriota bacterium IAD-21 DNA, complete genome blastn 188478 1040 1 Bacteria   Pseudomonadati Abditibacteriota         Abditibacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;