RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1093380", tax_clade = "Sar" and tax_phylum = "Apicomplexa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1093380 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4025682 4025682 PRJNA1093380_P_NODE_10544_length_258_cov_6.329730_g10438_i0 PRJNA1093380 10544 258 6.32973 16.3307034 Plasmodium gaboni 647221 SAR_Eukaryotes SAR_Eukaryotes 62.1 3.9e-5   NTclustered gi|1084815949|ref|XM_018784916.1| 647221 g10438 i0 100 17.6046511627907 33 0 13 0 143 175 5403 5371 Plasmodium gaboni E3 ubiquitin-protein ligase partial mRNA blastn 4542 62.1 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium gaboni
7851907 7851907 PRJNA1093380_P_NODE_5047_length_291_cov_2.059633_g4941_i0 PRJNA1093380 5047 291 2.059633 5.99353203 Plasmodium cynomolgi 5827 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.027   NTclustered gi|457874729|ref|XM_004224026.1| 1120755 g4941 i0 100 0.0962199312714777 28 0 10 0 230 257 290 263 Plasmodium cynomolgi strain B hypothetical protein (PCYB_126920) mRNA, complete cds blastn 28 52.8 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium cynomolgi
31047364 31047364 PRJNA1093380_P_NODE_7875_length_274_cov_1.368159_g7769_i0 PRJNA1093380 7875 274 1.368159 3.74875566 Babesia microti strain RI 1133968 SAR_Eukaryotes SAR_Eukaryotes 53.5 8.88e-6   NR XP_021337887.1 1133968 g7769 i0 43.6 1.02919708029197 94 45 95.3 4 271 11 586 678 XP_021337887.1 FACT complex subunit (SPT16/CDC68) [Babesia microti strain RI] diamond 282 53.5 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia microti

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;