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contig_metadata

22 rows where bioproject = "PRJNA1093380", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 22 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 22 ✖

bioproject 1

  • PRJNA1093380 · 22 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
199076 199076 PRJNA1093380_P_NODE_13881_length_247_cov_1.729885_g13775_i0 PRJNA1093380 13881 247 1.729885 4.27281595 Opitutus terrae 107709 Bacteria Bacteria 237 5.74e-58   NTclustered gi|177839040|gb|CP001032.1| 452637 g13775 i0 84.274 11.2550607287449 248 34 100 4 1 247 3507688 3507445 Opitutus terrae PB90-1, complete genome blastn 2780 237 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Opitutus Opitutus terrae
199131 199131 PRJNA1093380_P_NODE_17501_length_235_cov_2.191358_g17395_i0 PRJNA1093380 17501 235 2.191358 5.1496913 uncultured Verrucomicrobiota bacterium 156588 Bacteria Bacteria 398 2.349999999999999e-106   NTclustered gi|226525339|gb|FJ872375.1| 156588 g17395 i0 99.095 299.442553191489 221 2 94 0 15 235 27211 27431 Uncultured Verrucomicrobia bacterium clone 286 genomic sequence blastn 70369 398 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         uncultured Verrucomicrobiota bacterium
5301918 5301918 PRJNA1093380_P_NODE_12005_length_251_cov_0.865169_g11899_i0 PRJNA1093380 12005 251 0.865169 2.17157419 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 422 1.4999999999999998e-113   NTclustered gi|2874253768|emb|OY969715.1| 412056 g11899 i0 97.189 240.02390438247 249 7 99 0 3 251 915172 915420 MAG: uncultured Verrucomicrobiae bacterium isolate MFD01916.bin.1.1 genome assembly, chromosome: 1 blastn 60246 422 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
6577101 6577101 PRJNA1093380_P_NODE_3046_length_345_cov_1.794118_g2940_i0 PRJNA1093380 3046 345 1.794118 6.1897071 uncultured Verrucomicrobiota bacterium 156588 Bacteria Bacteria 571 2.0299999999999996e-158   NTclustered gi|226525339|gb|FJ872375.1| 156588 g2940 i0 96.522 90.4376811594203 345 12 100 0 1 345 27753 27409 Uncultured Verrucomicrobia bacterium clone 286 genomic sequence blastn 31201 571 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         uncultured Verrucomicrobiota bacterium
7851880 7851880 PRJNA1093380_P_NODE_307_length_1025_cov_2.407563_g234_i0 PRJNA1093380 307 1025 2.407563 24.67752075 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 1485 0   NTclustered gi|2874253690|emb|OY969416.1| 412056 g234 i0 93.113 83.8546341463415 1031 44 100 13 1 1025 1315791 1316800 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04967.bin.1.157 genome assembly, chromosome: 1 blastn 85951 1485 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
11677723 11677723 PRJNA1093380_P_NODE_1430_length_462_cov_2.290488_g1325_i0 PRJNA1093380 1430 462 2.290488 10.58205456 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 776 0   NTclustered gi|2874254065|emb|OY970130.1| 412056 g1325 i0 96.97 211.5670995671 462 14 100 0 1 462 5153307 5152846 MAG: uncultured Verrucomicrobiae bacterium isolate MFD05705.bin.c.1 genome assembly, chromosome: 1 blastn 97744 776 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
16776254 16776254 PRJNA1093380_P_NODE_2294_length_382_cov_1.983819_g2188_i0 PRJNA1093380 2294 382 1.983819 7.57818858 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 544 4.93e-150   NTclustered gi|2874253690|emb|OY969416.1| 412056 g2188 i0 94.828 112.973821989529 348 18 91 0 1 348 1315425 1315078 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04967.bin.1.157 genome assembly, chromosome: 1 blastn 43156 544 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
16776326 16776326 PRJNA1093380_P_NODE_7254_length_277_cov_1.965686_g7148_i0 PRJNA1093380 7254 277 1.965686 5.44495022 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 255 1.81e-63   NTclustered gi|2874253690|emb|OY969416.1| 412056 g7148 i0 83.509 2.05054151624549 285 35 99 6 2 277 2924625 2924344 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04967.bin.1.157 genome assembly, chromosome: 1 blastn 568 255 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
18870808 18870808 PRJNA1093380_P_NODE_2575_length_366_cov_1.443686_g2469_i0 PRJNA1093380 2575 366 1.443686 5.28389076 Luteolibacter 518753 Bacteria Bacteria 571 2.1599999999999996e-158   NTclustered gi|2836248208|gb|CP121322.1| 1962973 g2469 i0 94.809 258.713114754098 366 19 100 0 1 366 1008768 1009133 MAG: Luteolibacter sp. isolate NCC532_bact_1514 chromosome, complete genome blastn 94689 571 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp.
19324841 19324841 PRJNA1093380_P_NODE_1716_length_429_cov_1.283708_g1610_i0 PRJNA1093380 1716 429 1.283708 5.50710732 Pseudomonadati 3379134 Bacteria Bacteria 139 3.1999999999999995e-36   NR MBS0623645.1 2026799 g1610 i0 53.8 3 143 46 99.3 4 427 2 79 202 MBS0623645.1 tryptophan--tRNA ligase [Verrucomicrobiota bacterium] diamond 1287 140 0.992857142857143 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
20600218 20600218 PRJNA1093380_P_NODE_3597_length_325_cov_1.519841_g3491_i0 PRJNA1093380 3597 325 1.519841 4.93948325 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 383 9.53e-102   NTclustered gi|2874253690|emb|OY969416.1| 412056 g3491 i0 88.11 166.230769230769 328 32 99 7 3 325 1315544 1315219 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04967.bin.1.157 genome assembly, chromosome: 1 blastn 54025 383 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
21875991 21875991 PRJNA1093380_P_NODE_1898_length_412_cov_2.477876_g1792_i0 PRJNA1093380 1898 412 2.477876 10.20884912 uncultured Verrucomicrobiota bacterium 156588 Bacteria Bacteria 706 0   NTclustered gi|226525339|gb|FJ872375.1| 156588 g1792 i0 97.573 215.06067961165 412 10 100 0 1 412 26240 25829 Uncultured Verrucomicrobia bacterium clone 286 genomic sequence blastn 88605 706 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         uncultured Verrucomicrobiota bacterium
21876019 21876019 PRJNA1093380_P_NODE_4818_length_295_cov_1.265766_g4712_i0 PRJNA1093380 4818 295 1.265766 3.7340097 uncultured Verrucomicrobiota bacterium 156588 Bacteria Bacteria 392 1.4199999999999998e-104   NTclustered gi|226525317|gb|FJ872374.1| 156588 g4712 i0 91.096 7.63050847457627 292 22 98 3 6 295 3334 3623 Uncultured Verrucomicrobia bacterium clone 184 genomic sequence blastn 2251 392 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         uncultured Verrucomicrobiota bacterium
21876024 21876024 PRJNA1093380_P_NODE_5098_length_291_cov_1.059633_g4992_i0 PRJNA1093380 5098 291 1.059633 3.08353203 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 455 1.7600000000000003e-123   NTclustered gi|2874254065|emb|OY970130.1| 412056 g4992 i0 94.845 10.0549828178694 291 15 100 0 1 291 5153951 5153661 MAG: uncultured Verrucomicrobiae bacterium isolate MFD05705.bin.c.1 genome assembly, chromosome: 1 blastn 2926 455 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
23151571 23151571 PRJNA1093380_P_NODE_919_length_577_cov_2.222222_g816_i0 PRJNA1093380 919 577 2.222222 12.82222094 uncultured Verrucomicrobiales bacterium 100234 Bacteria Bacteria 983 0   NTclustered gi|220682213|gb|FJ542820.1| 100234 g816 i0 97.405 98.6395147313691 578 13 100 2 1 577 580 4 Uncultured Verrucomicrobiales bacterium clone A02-04D 16S ribosomal RNA gene, partial sequence blastn 56915 983 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales     uncultured Verrucomicrobiales bacterium
24425076 24425076 PRJNA1093380_P_NODE_360_length_941_cov_1.710829_g280_i0 PRJNA1093380 360 941 1.710829 16.09890089 uncultured Verrucomicrobiota bacterium 156588 Bacteria Bacteria 1408 0   NTclustered gi|226525339|gb|FJ872375.1| 156588 g280 i0 93.737 222.959617428268 942 54 99 5 1 940 28646 27708 Uncultured Verrucomicrobia bacterium clone 286 genomic sequence blastn 209805 1408 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         uncultured Verrucomicrobiota bacterium
26624376 26624376 PRJNA1093380_P_NODE_14281_length_246_cov_2.242775_g14175_i0 PRJNA1093380 14281 246 2.242775 5.5172265 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 44.3 0.00913   NR TMP96329.1 2026799 g14175 i0 44.4 0.658536585365854 54 29 65.9 1 84 245 39 91 TMP96329.1 MAG: porin family protein, partial [Verrucomicrobiota bacterium] diamond 162 44.3 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
26940934 26940934 PRJNA1093380_P_NODE_11002_length_256_cov_1.683060_g10896_i0 PRJNA1093380 11002 256 1.68306 4.3086336 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 159 1.26e-45   NR RYD65414.1 2026800 g10896 i0 81.2 0.99609375 85 16 99.6 0 1 255 245 329 RYD65414.1 MAG: hypothetical protein EOP84_31955 [Verrucomicrobiaceae bacterium] diamond 255 159 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
27004212 27004212 PRJNA1093380_P_NODE_15242_length_245_cov_0.895349_g15136_i0 PRJNA1093380 15242 245 0.895349 2.19360505 Opitutaceae bacterium 2006848 Bacteria Bacteria 107 1.84e-26   NR MBC7368709.1 2006848 g15136 i0 69.1 0.991836734693878 81 25 99.2 0 244 2 165 245 MBC7368709.1 hypothetical protein [Opitutaceae bacterium] diamond 243 107 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
27352329 27352329 PRJNA1093380_P_NODE_8203_length_272_cov_1.547739_g8097_i0 PRJNA1093380 8203 272 1.547739 4.20985008 Opitutales bacterium 2026772 Bacteria Bacteria 45.4 0.00594   NR MCC5835478.1 2026772 g8097 i0 42.9 0.463235294117647 42 24 46.3 0 129 4 137 178 MCC5835478.1 DUF3488 domain-containing protein [Opitutales bacterium] diamond 126 45.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales     Opitutales bacterium
30352501 30352501 PRJNA1093380_P_NODE_3892_length_315_cov_1.582645_g3786_i0 PRJNA1093380 3892 315 1.582645 4.98533175 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 43.9 0.0221   NR MEI6341235.1 2026799 g3786 i0 41.4 0.552380952380952 58 32 53.3 1 109 276 109 166 MEI6341235.1 permease prefix domain 1-containing protein [Verrucomicrobiota bacterium] diamond 174 43.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
31110060 31110060 PRJNA1093380_P_NODE_15895_length_243_cov_1.388235_g15789_i0 PRJNA1093380 15895 243 1.388235 3.37341105 Verrucomicrobiales bacterium 2026801 Bacteria Bacteria 45.4 0.00409   NR HCE04986.1 2026801 g15789 i0 50 0.54320987654321 44 22 54.3 0 104 235 152 195 HCE04986.1 hypothetical protein [Verrucomicrobiales bacterium] diamond 132 45.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales     Verrucomicrobiales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;