RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1093380", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 2 ✖

tax_clade 1

  • Amoebozoa · 2 ✖

bioproject 1

  • PRJNA1093380 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27447080 27447080 PRJNA1093380_P_NODE_10483_length_259_cov_1.586022_g10377_i0 PRJNA1093380 10483 259 1.586022 4.10779698 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 57.4 3.23e-7   NR XP_004333539.1 1257118 g10377 i0 37 0.938223938223938 81 46 88 2 259 32 883 963 XP_004333539.1 von Willebrand factor type A domain containing protein [Acanthamoeba castellanii str. Neff] diamond 243 57.4 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28583653 28583653 PRJNA1093380_P_NODE_12067_length_251_cov_0.865169_g11961_i0 PRJNA1093380 12067 251 0.865169 2.17157419 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 60.8 8.27e-10   NR XP_004332990.1 1257118 g11961 i0 70.6 0.812749003984064 34 10 40.6 0 202 101 20 53 XP_004332990.1 PPOD2 peroxidase, partial [Acanthamoeba castellanii str. Neff] diamond 204 60.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;