RNAquarium Metadata Server
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contig_metadata

11 rows where bioproject = "PRJNA1093380" and tax_clade = "Amoebozoa"

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tax_phylum 2

analysis 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 11 ✖

bioproject 1

  • PRJNA1093380 · 11 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1019172 1019172 PRJNA1093380_P_NODE_2821_length_355_cov_1.386525_g2715_i0 PRJNA1093380 2821 355 1.386525 4.92216375 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 346 1.38e-90   NTclustered gi|470237391|ref|XM_004350602.1| 261658 g2715 i0 84.27 98.7746478873239 356 54 100 2 1 355 603 249 Cavenderia fasciculata actin (DFA_11706), partial mRNA blastn 35065 346 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
1473644 1473644 PRJNA1093380_P_NODE_12782_length_249_cov_1.750000_g12676_i0 PRJNA1093380 12782 249 1.75 4.3575 Dictyostelium purpureum 5786 Evosea other_Eukaryota 145 3.61e-30   NTclustered gi|330803819|ref|XM_003289852.1| 5786 g12676 i0 79.524 1.68674698795181 210 37 83 6 12 218 762 968 Dictyostelium purpureum uncharacterized protein (DICPUDRAFT_80649), partial mRNA blastn 420 145 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
4025828 4025828 PRJNA1093380_P_NODE_5004_length_292_cov_1.406393_g4898_i0 PRJNA1093380 5004 292 1.406393 4.10666756 Physarum polycephalum 5791 Evosea other_Eukaryota 401 2.3299999999999993e-107   NTclustered gi|3221|emb|V01159.1| 5791 g4898 i0 93.091 25.527397260274 275 18 94 1 3 276 1080 1354 Physarum polycephalum gene encoding 5.8S rRNA and 26S rRNA blastn 7454 401 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum polycephalum
21875940 21875940 PRJNA1093380_P_NODE_14978_length_245_cov_0.895349_g14872_i0 PRJNA1093380 14978 245 0.895349 2.19360505 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 87 9.94e-18   NR KAH3742581.1 1580589 g14872 i0 50 1.95918367346939 80 38 98 1 3 242 529 606 KAH3742581.1 Tetratricopeptide repeat protein [Pelomyxa schiedti] diamond 480 87 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti
27447080 27447080 PRJNA1093380_P_NODE_10483_length_259_cov_1.586022_g10377_i0 PRJNA1093380 10483 259 1.586022 4.10779698 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 57.4 3.23e-7   NR XP_004333539.1 1257118 g10377 i0 37 0.938223938223938 81 46 88 2 259 32 883 963 XP_004333539.1 von Willebrand factor type A domain containing protein [Acanthamoeba castellanii str. Neff] diamond 243 57.4 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28583653 28583653 PRJNA1093380_P_NODE_12067_length_251_cov_0.865169_g11961_i0 PRJNA1093380 12067 251 0.865169 2.17157419 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 60.8 8.27e-10   NR XP_004332990.1 1257118 g11961 i0 70.6 0.812749003984064 34 10 40.6 0 202 101 20 53 XP_004332990.1 PPOD2 peroxidase, partial [Acanthamoeba castellanii str. Neff] diamond 204 60.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30343882 30343882 PRJNA1093380_P_NODE_14192_length_247_cov_0.885057_g14086_i0 PRJNA1093380 14192 247 0.885057 2.18609079 Dictyosteliales 2058949 Evosea other_Eukaryota 77.8 1.7e-14   NR XP_640445.1 352472 g14086 i0 49.4 5.64777327935223 79 40 96 0 9 245 403 481 XP_640445.1 hypothetical protein DDB_G0282067 [Dictyostelium discoideum AX4] diamond 1395 78.2 0.994884910485933 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
30636110 30636110 PRJNA1093380_P_NODE_2953_length_349_cov_1.402174_g2847_i0 PRJNA1093380 2953 349 1.402174 4.89358726 Dictyostelium discoideum 44689 Evosea other_Eukaryota 108 1.9e-26   NR AAD53482.1 44689 g2847 i0 47 1.95988538681948 115 61 98.9 0 349 5 53 167 AAD53482.1 countin [Dictyostelium discoideum] diamond 684 108 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
31670778 31670778 PRJNA1093380_P_NODE_12677_length_250_cov_0.870056_g12571_i0 PRJNA1093380 12677 250 0.870056 2.17514 Eumycetozoa 142796 Evosea other_Eukaryota 91.3 3.06e-19   NR KAF2073752.1 133409 g12571 i0 44.3 4.74 79 44 94.8 0 248 12 414 492 KAF2073752.1 hypothetical protein CYY_004954 [Polysphondylium violaceum] diamond 1185 91.7 0.995637949836423 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Polysphondylium Polysphondylium violaceum
32059056 32059056 PRJNA1093380_P_NODE_17538_length_234_cov_2.714286_g17432_i0 PRJNA1093380 17538 234 2.714286 6.35142924 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 48.1 4.08e-4   NR PRP76947.1 1890364 g17432 i0 52 1.28205128205128 50 19 64.1 1 151 2 366 410 PRP76947.1 hypothetical protein PROFUN_06225 [Planoprotostelium fungivorum] diamond 300 48.1 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
32596979 32596979 PRJNA1093380_P_NODE_14700_length_246_cov_0.890173_g14594_i0 PRJNA1093380 14700 246 0.890173 2.18982558 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 78.2 1.31e-14   NR KAH3765966.1 1580589 g14594 i0 48.6 0.878048780487805 72 37 87.8 0 237 22 433 504 KAH3765966.1 Phosphatidylinositol 3-kinase 1 [Pelomyxa schiedti] diamond 216 78.2 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;