contig_metadata
5 rows where bioproject = "PRJNA1093008" and tax_kingdom = "Methanobacteriati"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2749328 | 2749328 | PRJNA1093008_S_NODE_45803_length_301_cov_2.767544_g45476_i0 | PRJNA1093008 | 45803 | 301 | 2.767544 | 8.33030744 | Methanobrevibacter sp. | 66852 | Archaea | Archaea | 57.8 | 3.82e-7 | NR | MBO7734740.1 | 66852 | g45476 | i0 | 42.1 | 0.757475083056478 | 76 | 35 | 67.8 | 3 | 260 | 57 | 274 | 348 | MBO7734740.1 hypothetical protein [Methanobrevibacter sp.] | diamond | 228 | 57.8 | 1 | Archaea | Methanomada group | Methanobacteriati | Methanobacteriota | Methanobacteria | Methanobacteriales | Methanobacteriaceae | Methanobrevibacter | Methanobrevibacter sp. | |
| 8672275 | 8672275 | PRJNA1093008_S_NODE_51967_length_290_cov_2.884793_g51640_i0 | PRJNA1093008 | 51967 | 290 | 2.884793 | 8.3658997 | Halorussus | 1070314 | Archaea | Archaea | 503 | 6.17e-138 | NTclustered | gi|2234308622|gb|CP096658.1| | 2937524 | g51640 | i0 | 97.931 | 140.058620689655 | 290 | 6 | 100 | 0 | 1 | 290 | 1315870 | 1315581 | Halorussus gelatinilyticus strain XZYJT40 chromosome, complete genome | blastn | 40617 | 508 | 0.990157480314961 | Archaea | Stenosarchaea group | Methanobacteriati | Methanobacteriota | Halobacteria | Halobacteriales | Haladaptataceae | Halorussus | Halorussus gelatinilyticus | |
| 29174955 | 29174955 | PRJNA1093008_S_NODE_75909_length_257_cov_1.673913_g75582_i0 | PRJNA1093008 | 75909 | 257 | 1.673913 | 4.30195641 | root | 1 | Root_unresolved | Root_unresolved | 43.1 | 0.032 | NR | MBO7716670.1 | 66852 | g75582 | i0 | 45.3 | 2.46303501945525 | 53 | 26 | 59.5 | 3 | 252 | 100 | 224 | 275 | MBO7716670.1 hypothetical protein [Methanobrevibacter sp.] | diamond | 633 | 43.1 | 1 | Archaea | Methanomada group | Methanobacteriati | Methanobacteriota | Methanobacteria | Methanobacteriales | Methanobacteriaceae | Methanobrevibacter | Methanobrevibacter sp. | |
| 30731067 | 30731067 | PRJNA1093008_S_NODE_100874_length_223_cov_4.406667_g100547_i0 | PRJNA1093008 | 100874 | 223 | 4.406667 | 9.82686741 | Methanothrix sp. | 90426 | Archaea | Archaea | 42.4 | 0.0374 | NR | HOK59200.1 | 90426 | g100547 | i0 | 39.5 | 0.57847533632287 | 43 | 26 | 57.8 | 0 | 167 | 39 | 289 | 331 | HOK59200.1 DEAD/DEAH box helicase family protein [Methanothrix sp.] | diamond | 129 | 42.4 | 1 | Archaea | Stenosarchaea group | Methanobacteriati | Methanobacteriota | Methanomicrobia | Methanotrichales | Methanotrichaceae | Methanothrix | Methanothrix sp. | |
| 31521449 | 31521449 | PRJNA1093008_S_NODE_94456_length_242_cov_0.911243_g94129_i0 | PRJNA1093008 | 94456 | 242 | 0.911243 | 2.20520806 | Thermoplasmata archaeon | 1906666 | Archaea | Archaea | 42.7 | 0.0361 | NR | MDH3365094.1 | 1906666 | g94129 | i0 | 33.9 | 0.694214876033058 | 56 | 31 | 62 | 1 | 39 | 188 | 381 | 436 | MDH3365094.1 M20/M25/M40 family metallo-hydrolase [Thermoplasmata archaeon] | diamond | 168 | 42.7 | 1 | Archaea | Methanobacteriati | Thermoplasmatota | Thermoplasmata | Thermoplasmata archaeon |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;