RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1093008", tax_kingdom = "Fungi" and tax_phylum = "Chytridiomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 4 ✖

tax_kingdom 1

  • Fungi · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA1093008 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19324121 19324121 PRJNA1093008_S_NODE_15196_length_399_cov_5.061350_g14870_i0 PRJNA1093008 15196 399 5.06135 20.1947865 Spizellomyces punctatus 109760 Fungi Fungi 172 2.809999999999999e-38   NTclustered gi|1027029543|ref|XR_001677161.1| 645134 g14870 i0 83.42 50.7368421052632 193 24 48 6 1 192 3848 4033 Spizellomyces punctatus DAOM BR117 28S ribosomal RNA (SPPG_11002), rRNA blastn 20244 172 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces punctatus
28204405 28204405 PRJNA1093008_S_NODE_23726_length_358_cov_3.143860_g23399_i0 PRJNA1093008 23726 358 3.14386 11.2550188 Chytridiales sp. JEL 2011832 Fungi Fungi 94.7 1.16e-20   NR KAJ3409010.1 2786947 g23399 i0 48 1.65083798882682 100 42 77.1 2 330 55 194 291 KAJ3409010.1 hypothetical protein HDV05_004659 [Chytridiales sp. JEL 0842] diamond 591 94.7 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales     Chytridiales sp. JEL 0842
30817256 30817256 PRJNA1093008_S_NODE_21774_length_366_cov_2.627986_g21447_i0 PRJNA1093008 21774 366 2.627986 9.61842876 root 1 Root_unresolved Root_unresolved 43.9 0.0499   NR KAI8814821.1 109936 g21447 i0 29.9 1.31147540983607 77 52 63.1 1 363 133 222 296 KAI8814821.1 hypothetical protein BJ742DRAFT_734049 [Cladochytrium replicatum] diamond 480 43.9 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Cladochytriales Cladochytriaceae Cladochytrium Cladochytrium replicatum
32470644 32470644 PRJNA1093008_S_NODE_25379_length_352_cov_3.541219_g25052_i0 PRJNA1093008 25379 352 3.541219 12.46509088 Chytridium lagenaria 64509 Fungi Fungi 114 7.920000000000001e-27   NR KAI8849822.1 64509 g25052 i0 55.1 2.47159090909091 98 44 83.5 0 352 59 264 361 KAI8849822.1 hypothetical protein BC829DRAFT_432309 [Chytridium lagenaria] diamond 870 114 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytridiaceae Chytridium Chytridium lagenaria

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;