RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1093008", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA1093008 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27510091 27510091 PRJNA1093008_S_NODE_88383_length_246_cov_1.335260_g88056_i0 PRJNA1093008 88383 246 1.33526 3.2847396 Longimicrobiales bacterium 2910168 Bacteria Bacteria 45.4 0.00435   NR MDT8340922.1 2910168 g88056 i0 56.3 0.585365853658537 48 18 54.9 1 74 208 343 390 MDT8340922.1 S41 family peptidase [Longimicrobiales bacterium] diamond 144 45.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales     Longimicrobiales bacterium
30415499 30415499 PRJNA1093008_S_NODE_89953_length_245_cov_1.313953_g89626_i0 PRJNA1093008 89953 245 1.313953 3.21918485 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 42.4 0.05   NR HEX6251567.1 2026741 g89626 i0 51.4 0.453061224489796 37 16 42.9 1 121 17 318 354 HEX6251567.1 hypothetical protein [Gemmatimonadaceae bacterium] diamond 111 42.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
32817234 32817234 PRJNA1093008_S_NODE_77720_length_255_cov_1.692308_g77393_i0 PRJNA1093008 77720 255 1.692308 4.3153854 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 43.1 0.0291   NR PYP58850.1 2026742 g77393 i0 48.7 0.458823529411765 39 20 45.9 0 77 193 93 131 PYP58850.1 MAG: biotin--[acetyl-CoA-carboxylase] ligase [Gemmatimonadota bacterium] diamond 117 43.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;