RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

15 rows where bioproject = "PRJNA1093008" and tax_clade = "Amoebozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 3

analysis 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 15 ✖

bioproject 1

  • PRJNA1093008 · 15 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8672410 8672410 PRJNA1093008_S_NODE_95267_length_241_cov_1.833333_g94940_i0 PRJNA1093008 95267 241 1.833333 4.41833253 Acanthamoeba 5754 Discosea other_Eukaryota 403 5.199999999999998e-108   NTclustered gi|328751298|gb|JF437606.1| 5755 g94940 i0 100 91.0497925311203 218 0 90 0 1 218 227 10 Acanthamoeba castellanii strain T17c3 18S ribosomal RNA gene, partial sequence blastn 21943 403 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
16775444 16775444 PRJNA1093008_S_NODE_101574_length_208_cov_8.429630_g101247_i0 PRJNA1093008 101574 208 8.42963 17.5336304 Paraflabellula hoguae 136459 Tubulinea other_Eukaryota 84.2 6.46e-12   NTclustered gi|145386791|gb|EF216916.1| 136459 g101247 i0 88.406 34.5288461538462 69 8 33 0 1 69 1006 938 Paraflabellula hoguae 28S large subunit ribosomal RNA gene, partial sequence blastn 7182 84.2 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae Paraflabellula Paraflabellula hoguae
26814540 26814540 PRJNA1093008_S_NODE_66941_length_268_cov_4.343590_g66614_i0 PRJNA1093008 66941 268 4.34359 11.6408212 Cavenderia fasciculata 261658 Evosea other_Eukaryota 84.3 1.2e-16   NR XP_004350955.1 261658 g66614 i0 43.5 3.77238805970149 85 48 95.1 0 258 4 545 629 XP_004350955.1 uncharacterized protein DFA_12016 [Cavenderia fasciculata] diamond 1011 84.3 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
27667993 27667993 PRJNA1093008_S_NODE_28404_length_342_cov_5.888476_g28077_i0 PRJNA1093008 28404 342 5.888476 20.13858792 Tieghemostelium lacteum 361077 Evosea other_Eukaryota 61.2 3.32e-8   NR KYQ90477.1 361077 g28077 i0 36.8 0.763157894736842 87 52 73.7 1 341 90 275 361 KYQ90477.1 CBS (cystathionine-beta-synthase) domain-containing protein [Tieghemostelium lacteum] diamond 261 61.2 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Raperosteliaceae Tieghemostelium Tieghemostelium lacteum
28204412 28204412 PRJNA1093008_S_NODE_6946_length_492_cov_2.522673_g6623_i0 PRJNA1093008 6946 492 2.522673 12.41155116 Heterostelium album PN5 2086695 Evosea other_Eukaryota 113 1.51e-25   NR XP_020426832.1 670386 g6623 i0 43.2 0.76219512195122 125 67 75.6 2 28 399 809 930 XP_020426832.1 glycogen phosphorylase 2 [Heterostelium album PN500] diamond 375 113 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
29088764 29088764 PRJNA1093008_S_NODE_78208_length_254_cov_3.403315_g77881_i0 PRJNA1093008 78208 254 3.403315 8.6444201 Dictyostelium discoideum AX4 352472 Evosea other_Eukaryota 69.7 1.35e-11   NR XP_629991.1 352472 g77881 i0 45.8 0.850393700787402 72 36 81.5 2 23 229 201 272 XP_629991.1 actin related protein 5 [Dictyostelium discoideum AX4] diamond 216 69.7 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
29183575 29183575 PRJNA1093008_S_NODE_13169_length_414_cov_2.275660_g12843_i0 PRJNA1093008 13169 414 2.27566 9.4212324 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 95.9 2.89e-21   NR PRP81386.1 1890364 g12843 i0 43.8 0.927536231884058 128 60 91.3 2 4 381 117 234 PRP81386.1 hypothetical protein PROFUN_11007, partial [Planoprotostelium fungivorum] diamond 384 95.9 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
29499068 29499068 PRJNA1093008_S_NODE_60410_length_277_cov_4.465686_g60083_i0 PRJNA1093008 60410 277 4.465686 12.36995022 Dictyostelium discoideum AX4 352472 Evosea other_Eukaryota 55.5 1.07e-6   NR XP_647800.2 352472 g60083 i0 40.6 0.747292418772563 69 36 69.3 1 11 202 149 217 XP_647800.2 hypothetical protein DDB_G0278883 [Dictyostelium discoideum AX4] diamond 207 55.5 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
29751453 29751453 PRJNA1093008_S_NODE_19471_length_376_cov_4.537954_g19144_i0 PRJNA1093008 19471 376 4.537954 17.06270704 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 55.1 2.48e-6   NR XP_004340693.1 1257118 g19144 i0 39.7 0.542553191489362 68 40 54.3 1 376 173 111 177 XP_004340693.1 universal stress domain containing protein [Acanthamoeba castellanii str. Neff] diamond 204 55.1 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29941405 29941405 PRJNA1093008_S_NODE_73291_length_260_cov_2.513369_g72964_i0 PRJNA1093008 73291 260 2.513369 6.5347594 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 43.1 0.0317   NR XP_004348571.1 1257118 g72964 i0 38.5 0.6 52 31 58.8 1 29 181 266 317 XP_004348571.1 uncharacterized protein ACA1_159090 [Acanthamoeba castellanii str. Neff] diamond 156 43.1 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31078801 31078801 PRJNA1093008_S_NODE_21315_length_368_cov_2.389831_g20988_i0 PRJNA1093008 21315 368 2.389831 8.79457808 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 63.5 5.8e-9   NR PRP73126.1 1890364 g20988 i0 36.8 0.929347826086957 114 66 90.5 4 361 29 192 302 PRP73126.1 hypothetical protein PROFUN_03440 [Planoprotostelium fungivorum] diamond 342 63.5 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
31733902 31733902 PRJNA1093008_S_NODE_38817_length_316_cov_1.407407_g38490_i0 PRJNA1093008 38817 316 1.407407 4.44740612 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 108 1.4700000000000002e-27   NR PRP79970.1 1890364 g38490 i0 56.8 5.2974683544303804 95 39 88.3 1 316 38 52 146 PRP79970.1 RNA-binding protein 8A [Planoprotostelium fungivorum] diamond 1674 109 0.990825688073395 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
31742613 31742613 PRJNA1093008_S_NODE_30917_length_335_cov_2.385496_g30590_i0 PRJNA1093008 30917 335 2.385496 7.9914116 Dictyostelium purpureum 5786 Evosea other_Eukaryota 54.7 7.05e-6   NR XP_003292844.1 5786 g30590 i0 42 0.617910447761194 69 35 61.8 1 3 209 209 272 XP_003292844.1 uncharacterized protein DICPUDRAFT_58185 [Dictyostelium purpureum] diamond 207 54.7 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
31742616 31742616 PRJNA1093008_S_NODE_53917_length_287_cov_2.425234_g53590_i0 PRJNA1093008 53917 287 2.425234 6.96042158 Tieghemostelium lacteum 361077 Evosea other_Eukaryota 58.2 2.2e-7   NR KYQ90477.1 361077 g53590 i0 32.3 1.03484320557491 99 63 99.3 2 285 1 263 361 KYQ90477.1 CBS (cystathionine-beta-synthase) domain-containing protein [Tieghemostelium lacteum] diamond 297 58.2 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Raperosteliaceae Tieghemostelium Tieghemostelium lacteum
32533907 32533907 PRJNA1093008_S_NODE_58939_length_280_cov_1.115942_g58612_i0 PRJNA1093008 58939 280 1.115942 3.1246376 Heterostelium album PN5 2086695 Evosea other_Eukaryota 52 3.32e-5   NR XP_020426832.1 670386 g58612 i0 54.3 1.275 46 21 49.3 0 142 5 65 110 XP_020426832.1 glycogen phosphorylase 2 [Heterostelium album PN500] diamond 357 52 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;