RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA1092581" and tax_phylum = "Foraminifera"

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tax_superkingdom 1

tax_phylum 1

  • Foraminifera · 1 ✖

tax_clade 1

bioproject 1

  • PRJNA1092581 · 1 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4846662 4846662 PRJNA1092581_P_NODE_70484_length_311_cov_28.626050_g69951_i0 PRJNA1092581 70484 311 28.62605 89.0270155 Rotaliida 29185 SAR_Eukaryotes SAR_Eukaryotes 315 3.36e-81   NTclustered gi|998623043|dbj|LC049322.1| 51039 g69951 i0 88.043 54.096463022508 276 19 85 13 39 301 4035 4309 Neogloboquadrina dutertrei gene for 28S rRNA, partial sequence, isolate: 11-9-T89 blastn 16824 316 0.996835443037975 Eukaryota Sar   Foraminifera   Rotaliida Globorotaliidae Neogloboquadrina Neogloboquadrina dutertrei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;