RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

5 rows where bioproject = "PRJNA1092581" and tax_phylum = "Chlamydiota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1092581 · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10399046 10399046 PRJNA1092581_P_NODE_111589_length_237_cov_5.207317_g111056_i0 PRJNA1092581 111589 237 5.207317 12.34134129 uncultured Parachlamydiaceae bacterium 464461 Bacteria Bacteria 296 8.900000000000001e-76   NTclustered gi|2874253811|emb|OY969795.1| 464461 g111056 i0 91.628 142.122362869198 215 16 90 2 25 237 655403 655189 MAG: uncultured Parachlamydiaceae bacterium isolate MFD05502.bin.c.3 genome assembly, chromosome: 1 blastn 33683 296 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   uncultured Parachlamydiaceae bacterium
12497333 12497333 PRJNA1092581_P_NODE_62030_length_336_cov_2.631179_g61497_i0 PRJNA1092581 62030 336 2.631179 8.84076144 Pseudomonadati 3379134 Bacteria Bacteria 255 2.25e-63   NTclustered gi|2874253676|emb|OY969110.1| 305355 g61497 i0 82.353 101.979166666667 306 42 90 10 32 334 1641657 1641361 MAG: uncultured Chlamydiae bacterium isolate MFD00082.bin.c.5 genome assembly, chromosome: 1 blastn 34265 255 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia       uncultured Chlamydiae bacterium
21872874 21872874 PRJNA1092581_P_NODE_126338_length_202_cov_77.488372_g125805_i0 PRJNA1092581 126338 202 77.488372 156.52651144 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 174 3.6e-39   NTclustered gi|1869331976|gb|CP058704.1| 2052176 g125805 i0 84.53 39.8613861386139 181 22 88 6 24 201 1334287 1334110 Parachlamydiaceae bacterium isolate SSA5 chromosome blastn 8052 174 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
21873776 21873776 PRJNA1092581_P_NODE_43838_length_410_cov_5.388724_g43305_i0 PRJNA1092581 43838 410 5.388724 22.0937684 Candidatus Protochlamydia naegleriophila 389348 Bacteria Bacteria 593 5.219999999999998e-165   NTclustered gi|971146634|emb|LN879502.1| 389348 g43305 i0 93.12 129.40243902439 407 24 99 4 1 405 1250390 1249986 Protochlamydia naegleriophila genome assembly PNK1, chromosome : cPNK blastn 53055 593 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila
30320885 30320885 PRJNA1092581_P_NODE_91872_length_266_cov_2.595855_g91339_i0 PRJNA1092581 91872 266 2.595855 6.9049743 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 58.9 9.72e-8   NR MBA3815754.1 2052176 g91339 i0 42 0.913533834586466 81 44 90.2 2 260 21 446 524 MBA3815754.1 ankyrin repeat domain-containing protein [Parachlamydiaceae bacterium] diamond 243 58.9 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;