RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA1092581" and tax_kingdom = "Pararnavirae"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 3 ✖

bioproject 1

  • PRJNA1092581 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11222259 11222259 PRJNA1092581_P_NODE_91869_length_266_cov_2.616580_g91336_i0 PRJNA1092581 91869 266 2.61658 6.9601028 Gammaretrovirus 153135 Viruses Viruses 403 5.8299999999999995e-108   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g91336 i0 97.854 64.812030075188 233 5 88 0 6 238 4113 3881 Moloney murine leukemia virus, complete genome blastn 17240 403 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
19323847 19323847 PRJNA1092581_P_NODE_90656_length_268_cov_3.994872_g90123_i0 PRJNA1092581 90656 268 3.994872 10.70625696 Gammaretrovirus felleu 3428951 Viruses Viruses 259 1.35e-64   NTclustered gi|1249614576|dbj|AB898926.1| 11768 g90123 i0 91.099 0.712686567164179 191 17 71 0 56 246 1451 1261 Feline leukemia virus gene for gag-pol polyprotein gPr80, partial sequence, clone: g45-5R blastn 191 259 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus felleu
22695152 22695152 PRJNA1092581_P_NODE_38238_length_443_cov_31.191892_g37705_i0 PRJNA1092581 38238 443 31.191892 138.18008156 Gammaretrovirus 153135 Viruses Viruses 691 0   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g37705 i0 99.735 82.8306997742664 377 1 85 0 39 415 4589 4213 Moloney murine leukemia virus, complete genome blastn 36694 691 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;