RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1092581", tax_clade = "delta/epsilon subdivisions" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 2 ✖

tax_clade 1

  • delta/epsilon subdivisions · 2 ✖

bioproject 1

  • PRJNA1092581 · 2 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9946176 9946176 PRJNA1092581_P_NODE_127548_length_199_cov_4.214286_g127015_i0 PRJNA1092581 127548 199 4.214286 8.38642914 Myxococcota 2818505 Bacteria Bacteria 300 5.5900000000000004e-77   NTclustered gi|53759175|gb|AY728065.1| 34034 g127015 i0 99.394 84.9346733668342 165 1 83 0 18 182 772 936 Uncultured delta proteobacterium clone S1-4-CL8 16S ribosomal RNA gene, partial sequence blastn 16902 300 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
28046672 28046672 PRJNA1092581_P_NODE_67505_length_319_cov_10.268293_g66972_i0 PRJNA1092581 67505 319 10.268293 32.75585467 Persicimonas sp. 2766932 Bacteria Bacteria 47 0.00304   NR MFP4599310.1 2766932 g66972 i0 30.2 0.90282131661442 96 59 83.7 3 34 300 152 246 MFP4599310.1 hypothetical protein [Persicimonas sp.] diamond 288 47 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Bradymonadaceae Persicimonas Persicimonas sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;