RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA1092581" and tax_clade = "BD1-7 clade"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • BD1-7 clade · 1 ✖

bioproject 1

  • PRJNA1092581 · 1 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30825788 30825788 PRJNA1092581_P_NODE_104454_length_247_cov_1.931034_g103921_i0 PRJNA1092581 104454 247 1.931034 4.76965398 marine gamma proteobacterium HTCC2143 247633 Bacteria Bacteria 49.7 8.58e-5   NR EAW32477.1 247633 g103921 i0 64.5 1.54251012145749 31 11 37.7 0 39 131 175 205 EAW32477.1 hypothetical protein GP2143_14516 [marine gamma proteobacterium HTCC2143] diamond 381 49.7 1 Bacteria BD1-7 clade Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Spongiibacteraceae   marine gamma proteobacterium HTCC2143

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;