RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA1092581", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 3 ✖

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA1092581 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6121759 6121759 PRJNA1092581_P_NODE_72485_length_306_cov_8.845494_g71952_i0 PRJNA1092581 72485 306 8.845494 27.06721164 root 1 Root_unresolved Root_unresolved 224 5.709999999999999e-54   NTclustered gi|292559443|ref|NC_013986.1| 5778 g71952 i0 84.416 78.3660130718954 231 33 75 2 70 298 27223 27452 Hartmannella vermiformis mitochondrion, complete genome blastn 23980 224 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
17596305 17596305 PRJNA1092581_P_NODE_65614_length_325_cov_2.373016_g65081_i0 PRJNA1092581 65614 325 2.373016 7.712302 Vermamoeba 1260114 Tubulinea other_Eukaryota 501 2.519999999999999e-137   NTclustered gi|909719645|gb|KT185625.1| 5778 g65081 i0 96.393 42.7661538461538 305 9 94 2 1 304 5778 5475 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 13899 501 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
30036023 30036023 PRJNA1092581_P_NODE_34111_length_472_cov_3.328321_g33579_i0 PRJNA1092581 34111 472 3.328321 15.70967512 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 193 2.23e-60   NR ABD72565.1 5778 g33579 i0 70.1 0.807203389830508 127 38 80.7 0 33 413 8 134 ABD72565.1 chitinase-like protein cluster B, partial [Vermamoeba vermiformis] diamond 381 193 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;