RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1089179" and tax_kingdom = "Thermotogati"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJNA1089179 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27162119 27162119 PRJNA1089179_P_NODE_14482_length_251_cov_0.865169_g14464_i0 PRJNA1089179 14482 251 0.865169 2.17157419 Thermus tengchongensis 1214928 Bacteria Bacteria 126 6.3e-32   NR WP_185747603.1 1214928 g14464 i0 77.1 0.99203187250996006 83 19 99.2 0 251 3 135 217 WP_185747603.1 DUF5591 domain-containing protein [Thermus tengchongensis] diamond 249 126 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus tengchongensis
28488780 28488780 PRJNA1089179_P_NODE_14667_length_250_cov_0.870056_g14649_i0 PRJNA1089179 14667 250 0.870056 2.17514 Deinococcus cellulosilyticus 401558 Bacteria Bacteria 158 4.11e-45   NR WP_146885508.1 401558 g14649 i0 95.2 0.996 83 4 99.6 0 2 250 100 182 WP_146885508.1 non-hydrolyzing UDP-N-acetylglucosamine 2-epimerase [Deinococcus cellulosilyticus] diamond 249 158 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus cellulosilyticus
29719826 29719826 PRJNA1089179_P_NODE_16550_length_243_cov_1.623529_g16532_i0 PRJNA1089179 16550 243 1.623529 3.94517547 Synergistaceae bacterium 2053624 Bacteria Bacteria 110 7.64e-26   NR MDR0647870.1 2053624 g16532 i0 61.7 5 81 31 100 0 243 1 315 395 MDR0647870.1 InlB B-repeat-containing protein [Synergistaceae bacterium] diamond 1215 110 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae   Synergistaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;