RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1089179", tax_kingdom = "Pseudomonadati" and tax_phylum = "Spirochaetota"

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tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA1089179 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24420648 24420648 PRJNA1089179_P_NODE_11140_length_280_cov_2.362319_g11122_i0 PRJNA1089179 11140 280 2.362319 6.6144932 Spirochaetota bacterium 2202144 Bacteria Bacteria 95.1 7.26e-23   NR RKX96623.1 2202144 g11122 i0 82.8 3.11785714285714 58 10 62.1 0 2 175 64 121 RKX96623.1 MAG: 30S ribosomal protein S13 [Spirochaetota bacterium] diamond 873 95.1 1 Bacteria   Pseudomonadati Spirochaetota         Spirochaetota bacterium
32050438 32050438 PRJNA1089179_P_NODE_16438_length_244_cov_0.900585_g16420_i0 PRJNA1089179 16438 244 0.900585 2.1974274 Pseudomonadati 3379134 Bacteria Bacteria 52 2.01e-5   NR MBN2078136.1 2202144 g16420 i0 42.9 6.6516393442623 63 33 77.5 1 27 215 209 268 MBN2078136.1 tetratricopeptide repeat protein [Spirochaetota bacterium] diamond 1623 52 1 Bacteria   Pseudomonadati Spirochaetota         Spirochaetota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;