RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1089179", tax_kingdom = "Pseudomonadati" and tax_phylum = "Nitrospirota"

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tax_superkingdom 1

tax_phylum 1

  • Nitrospirota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA1089179 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20595884 20595884 PRJNA1089179_P_NODE_6397_length_348_cov_1.120000_g6379_i0 PRJNA1089179 6397 348 1.12 3.8976 Pseudomonadati 3379134 Bacteria Bacteria 212 1.06e-61   NR MBS0173727.1 70125 g6379 i0 88.7 81.2931034482759 115 13 99.1 0 3 347 505 619 MBS0173727.1 DNA polymerase III subunit alpha [Nitrospira sp.] diamond 28290 214 0.990654205607477 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
31299827 31299827 PRJNA1089179_P_NODE_16995_length_242_cov_0.911243_g16977_i0 PRJNA1089179 16995 242 0.911243 2.20520806 Nitrospira sp. 70125 Bacteria Bacteria 115 5.269999999999999e-31   NR MDN5940810.1 70125 g16977 i0 78.9 1.8595041322314 71 15 88 0 28 240 1 71 MDN5940810.1 helix-turn-helix domain-containing protein [Nitrospira sp.] diamond 450 115 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;