RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA1089179", tax_kingdom = "Pseudomonadati" and tax_phylum = "Bdellovibrionota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA1089179 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30541437 30541437 PRJNA1089179_P_NODE_15733_length_246_cov_0.890173_g15715_i0 PRJNA1089179 15733 246 0.890173 2.18982558 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 140 9.55e-40   NR MFA7276910.1 2026715 g15715 i0 77.8 0.98780487804878 81 18 98.8 0 245 3 66 146 MFA7276910.1 hypothetical protein [Pseudobdellovibrionaceae bacterium] diamond 243 140 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
32650909 32650909 PRJNA1089179_P_NODE_16920_length_242_cov_0.911243_g16902_i0 PRJNA1089179 16920 242 0.911243 2.20520806 Pseudomonadati 3379134 Bacteria Bacteria 110 1.6500000000000002e-26   NR MFA7276023.1 2026715 g16902 i0 63.8 1.98347107438017 80 29 99.2 0 242 3 107 186 MFA7276023.1 oxygen-independent coproporphyrinogen III oxidase [Pseudobdellovibrionaceae bacterium] diamond 480 110 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;