RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1089179", tax_kingdom = "Metazoa" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 2 ✖

tax_kingdom 1

  • Metazoa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1089179 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2745574 2745574 PRJNA1089179_P_NODE_9443_length_299_cov_1.331858_g9425_i0 PRJNA1089179 9443 299 1.331858 3.98225542 Strongyloides papillosus 174720 Nematoda Nematoda 52.8 0.028   NTclustered gi|690018648|emb|LM525943.1| 174720 g9425 i0 86.275 0.17056856187291 51 4 16 3 226 274 16728 16777 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000314 blastn 51 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
18046504 18046504 PRJNA1089179_P_NODE_14295_length_251_cov_2.168539_g14277_i0 PRJNA1089179 14295 251 2.168539 5.44303289 Metazoa 33208 Nematoda Nematoda 65.5 4.04e-10   NR TMS37759.1 34508 g14277 i0 48.5 1.57768924302789 66 34 78.9 0 202 5 300 365 TMS37759.1 hypothetical protein L596_004626 [Steinernema carpocapsae] diamond 396 65.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Steinernematidae Steinernema Steinernema carpocapsae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;