RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1089179", tax_clade = "Sar" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1089179 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4845633 4845633 PRJNA1089179_P_NODE_9244_length_301_cov_4.250000_g9226_i0 PRJNA1089179 9244 301 4.25 12.7925 Pythium 4797 SAR_Eukaryotes SAR_Eukaryotes 556 4.87e-154   NTclustered gi|2832795190|gb|PQ465262.1| 88834 g9226 i0 100 99.9501661129568 301 0 100 0 1 301 2532 2832 Pythium porphyrae isolate Bangia fuscopurpurea small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 30085 556 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium porphyrae
6572701 6572701 PRJNA1089179_P_NODE_1906_length_544_cov_2.927813_g1889_i0 PRJNA1089179 1906 544 2.927813 15.92730272 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 122 4.019999999999999e-23   NTclustered gi|1900848148|gb|MT820653.1| 4785 g1889 i0 85 2.05330882352941 120 18 22 0 230 349 154 273 Phytophthora cinnamomi isolate 49_1 40S ribosomal protein S20 gene, partial cds blastn 1117 122 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
29017218 29017218 PRJNA1089179_P_NODE_14328_length_251_cov_1.573034_g14310_i0 PRJNA1089179 14328 251 1.573034 3.94831534 root 1 Root_unresolved Root_unresolved 115 1.46e-27   NR OWZ10377.1 4795 g14310 i0 62.7 59.2948207171315 83 31 99.2 0 2 250 16 98 OWZ10377.1 Gag-pol fusion protein, partial [Phytophthora megakarya] diamond 14883 116 0.991379310344828 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora megakarya

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;