RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA1088503" and tax_phylum = "Cnidaria"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Cnidaria · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1088503 · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
194584 194584 PRJNA1088503_P_NODE_801_length_967_cov_57717.099147_g693_i0 PRJNA1088503 801 967 57717.099147 558124.34875149 Trachyphyllia geoffroyi 196280 Cnidaria other_Eukaryota 850 0   NTclustered gi|23503507|dbj|AB085641.1| 196280 g693 i0 90.184 4.73216132368149 652 64 67 0 3 654 24 675 Trachyphyllia geoffroyi mRNA for Kaede, complete cds blastn 4576 850 1 Eukaryota Opisthokonta Metazoa Cnidaria Anthozoa Scleractinia Merulinidae Trachyphyllia Trachyphyllia geoffroyi
20595624 20595624 PRJNA1088503_P_NODE_9897_length_194_cov_1.781818_g9525_i0 PRJNA1088503 9897 194 1.781818 3.45672692 Metazoa 33208 Cnidaria other_Eukaryota 100 1.6399999999999998e-23   NR XP_031572252.1 6105 g9525 i0 83 12.0309278350515 53 9 82 0 160 2 161 213 XP_031572252.1 protein YIF1B-B-like isoform X1 [Actinia tenebrosa] diamond 2334 100 1 Eukaryota Opisthokonta Metazoa Cnidaria Anthozoa Actiniaria Actiniidae Actinia Actinia tenebrosa
27320478 27320478 PRJNA1088503_P_NODE_3063_length_513_cov_3.064050_g2759_i0 PRJNA1088503 3063 513 3.06405 15.7185765 Porites evermanni 104178 Cnidaria other_Eukaryota 107 2.1900000000000003e-27   NR CAH3022204.1 104178 g2759 i0 71.9 0.374269005847953 64 18 37.4 0 452 261 1 64 CAH3022204.1 unnamed protein product [Porites evermanni] diamond 192 107 1 Eukaryota Opisthokonta Metazoa Cnidaria Anthozoa Scleractinia Poritidae Porites Porites evermanni
29309554 29309554 PRJNA1088503_P_NODE_11409_length_157_cov_1.835938_g11037_i0 PRJNA1088503 11409 157 1.835938 2.88242266 Actinia tenebrosa 6105 Cnidaria other_Eukaryota 83.2 3.53e-18   NR XP_031572053.1 6105 g11037 i0 76 0.955414012738854 50 12 95.5 0 3 152 143 192 XP_031572053.1 peroxiredoxin-5, mitochondrial-like [Actinia tenebrosa] diamond 150 83.2 1 Eukaryota Opisthokonta Metazoa Cnidaria Anthozoa Actiniaria Actiniidae Actinia Actinia tenebrosa
32470573 32470573 PRJNA1088503_P_NODE_9839_length_195_cov_1.861446_g9467_i0 PRJNA1088503 9839 195 1.861446 3.6298197 Nematostella vectensis 45351 Cnidaria other_Eukaryota 67 1.79e-11   NR EDO33567.1 45351 g9467 i0 66 1.58461538461538 50 17 76.9 0 158 9 3 52 EDO33567.1 predicted protein [Nematostella vectensis] diamond 309 67 1 Eukaryota Opisthokonta Metazoa Cnidaria Anthozoa Actiniaria Edwardsiidae Nematostella Nematostella vectensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;