RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1088503" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1088503 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26624300 26624300 PRJNA1088503_P_NODE_3241_length_497_cov_27161.463675_g2928_i0 PRJNA1088503 3241 497 27161.463675 134992.47446475 Blastocatellia bacterium 2052146 Bacteria Bacteria 207 3.64e-61   NR HXG66487.1 2052146 g2928 i0 69.7 7.03219315895372 145 43 86.9 1 29 460 361 505 HXG66487.1 fatty acid--CoA ligase [Blastocatellia bacterium] diamond 3495 207 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia       Blastocatellia bacterium
32280747 32280747 PRJNA1088503_P_NODE_10639_length_174_cov_1563.151724_g10267_i0 PRJNA1088503 10639 174 1563.151724 2719.88399976 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 56.6 1.84e-7   NR MCY7346820.1 2283092 g10267 i0 86.2 2 29 4 50 0 107 21 1 29 MCY7346820.1 LptF/LptG family permease [Pyrinomonadaceae bacterium] diamond 348 56.6 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;