RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1088503" and tax_clade = "Sar"

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tax_phylum 2

analysis 2

tax_superkingdom 1

tax_clade 1

bioproject 1

  • PRJNA1088503 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16320022 16320022 PRJNA1088503_P_NODE_8813_length_221_cov_55486.421875_g8441_i0 PRJNA1088503 8813 221 55486.421875 122624.99234375 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 259 1.08e-64   NTclustered gi|291495599|gb|GU823226.1| 152704 g8441 i0 100 63.3484162895928 140 0 63 0 1 140 527 388 Uncultured stramenopile clone BCA5F13RJ3F09 18S ribosomal RNA gene, partial sequence blastn 14000 259 1 Eukaryota Sar             uncultured stramenopile
17595294 17595294 PRJNA1088503_P_NODE_4414_length_406_cov_25366.639257_g4053_i0 PRJNA1088503 4414 406 25366.639257 102988.55538342 Endomyxa 2604748 SAR_Eukaryotes SAR_Eukaryotes 65.8 5e-6   NTclustered gi|1511360564|emb|LS992577.1| 37360 g4053 i0 97.368 0.561576354679803 38 1 9 0 110 147 7782 7745 Plasmodiophora brassicae genome assembly, organelle: mitochondrion blastn 228 65.8 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
29719816 29719816 PRJNA1088503_P_NODE_2570_length_570_cov_1.674677_g2299_i0 PRJNA1088503 2570 570 1.674677 9.5456589 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 97.8 7.98e-20   NR KAJ8559202.1 4785 g2299 i0 57 1.03684210526316 100 17 38.9 1 521 300 881 980 KAJ8559202.1 hypothetical protein ON010_g8244 [Phytophthora cinnamomi] diamond 591 97.8 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
32848627 32848627 PRJNA1088503_P_NODE_10840_length_169_cov_748.500000_g10468_i0 PRJNA1088503 10840 169 748.5 1264.965 Peronospora effusa 542832 SAR_Eukaryotes SAR_Eukaryotes 44.3 0.00399   NR RMX68426.1 542832 g10468 i0 74.1 0.958579881656805 27 7 47.9 0 28 108 525 551 RMX68426.1 hypothetical protein DD238_004672 [Peronospora effusa] diamond 162 44.3 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora effusa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;