RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1088503", tax_clade = "Opisthokonta" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 2 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 2 ✖

bioproject 1

  • PRJNA1088503 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
194577 194577 PRJNA1088503_P_NODE_6281_length_307_cov_39029.118705_g5909_i0 PRJNA1088503 6281 307 39029.118705 119819.39442435 Paragonimus westermani 34504 Platyhelminthes Platyhelminthes 97.4 2.73e-24   NR KAA3682244.1 34504 g5909 i0 85.7 3.4885993485342 56 8 54.7 0 76 243 1 56 KAA3682244.1 large subunit ribosomal protein L29e [Paragonimus westermani] diamond 1071 97.4 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Troglotrematidae Paragonimus Paragonimus westermani
21871318 21871318 PRJNA1088503_P_NODE_10918_length_168_cov_1.424460_g10546_i0 PRJNA1088503 10918 168 1.42446 2.3930928 Metazoa 33208 Platyhelminthes Platyhelminthes 117 4.7999999999999997e-32   NR AAP06423.1 6182 g10546 i0 94.5 263.214285714286 55 3 98.2 0 3 167 65 119 AAP06423.1 similar to GenBank Accession Number S20348 protein phosphatase type 2A catalytic subunit in Bos taurus [Schistosoma japonicum] diamond 44220 117 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;