RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1088503", tax_clade = "Opisthokonta" and tax_phylum = "Echinodermata"

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tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 2 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 2 ✖

bioproject 1

  • PRJNA1088503 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26909379 26909379 PRJNA1088503_P_NODE_10742_length_172_cov_2.104895_g10370_i0 PRJNA1088503 10742 172 2.104895 3.6204194 Asterias rubens 7604 Echinodermata other_Eukaryota 53.1 2.57e-6   NR XP_033631216.1 7604 g10370 i0 70 7.25581395348837 30 9 52.3 0 92 3 127 156 XP_033631216.1 RNA-binding protein with serine-rich domain 1-like [Asterias rubens] diamond 1248 53.1 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Forcipulatida Asteriidae Asterias Asterias rubens
31987028 31987028 PRJNA1088503_P_NODE_11618_length_153_cov_1.951613_g11246_i0 PRJNA1088503 11618 153 1.951613 2.98596789 Metazoa 33208 Echinodermata other_Eukaryota 104 1.7599999999999998e-24   NR NP_001116974.1 7668 g11246 i0 98 22 51 1 100 0 1 153 217 267 NP_001116974.1 ATP synthase beta subunit [Strongylocentrotus purpuratus] diamond 3366 105 0.990476190476191 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;