RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA1088503", tax_clade = "Opisthokonta" and tax_phylum = "Brachiopoda"

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tax_superkingdom 1

tax_phylum 1

  • Brachiopoda · 6 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 6 ✖

bioproject 1

  • PRJNA1088503 · 6 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19320226 19320226 PRJNA1088503_P_NODE_1236_length_814_cov_451.830573_g1094_i0 PRJNA1088503 1236 814 451.830573 3677.90086422 Lingula anatina 7574 Brachiopoda other_Eukaryota 392 2.31e-135   NR XP_013380988.2 7574 g1094 i0 76.4 1.81326781326781 246 58 90.7 0 47 784 1 246 XP_013380988.2 60S ribosomal protein L7 [Lingula anatina] diamond 1476 392 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
28994179 28994179 PRJNA1088503_P_NODE_11748_length_151_cov_1.622951_g11376_i0 PRJNA1088503 11748 151 1.622951 2.45065601 Lingula anatina 7574 Brachiopoda other_Eukaryota 85.5 2.62e-19   NR XP_013390948.1 7574 g11376 i0 72.3 0.933774834437086 47 13 93.4 0 9 149 77 123 XP_013390948.1 prostaglandin E synthase 3 [Lingula anatina] diamond 141 85.5 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
29522003 29522003 PRJNA1088503_P_NODE_9630_length_201_cov_1.511628_g9258_i0 PRJNA1088503 9630 201 1.511628 3.03837228 Metazoa 33208 Brachiopoda other_Eukaryota 98.2 3.3899999999999996e-24   NR XP_013411007.1 7574 g9258 i0 68.9 4.65671641791045 61 19 91 0 3 185 92 152 XP_013411007.1 histone deacetylase complex subunit SAP18 [Lingula anatina] diamond 936 98.2 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
30825765 30825765 PRJNA1088503_P_NODE_5434_length_346_cov_2.668770_g5062_i0 PRJNA1088503 5434 346 2.66877 9.2339442 Lingula anatina 7574 Brachiopoda other_Eukaryota 124 2.49e-32   NR XP_013399917.1 7574 g5062 i0 55.3 0.988439306358382 114 47 98.8 1 342 1 4 113 XP_013399917.1 60S ribosomal protein L6 [Lingula anatina] diamond 342 124 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
31236465 31236465 PRJNA1088503_P_NODE_10515_length_178_cov_1.624161_g10143_i0 PRJNA1088503 10515 178 1.624161 2.89100658 Lingula anatina 7574 Brachiopoda other_Eukaryota 59.7 6.21e-9   NR XP_013405017.1 7574 g10143 i0 76.5 1.23033707865169 34 8 57.3 0 2 103 162 195 XP_013405017.1 proteasome subunit beta type-2 [Lingula anatina] diamond 219 59.7 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
31331408 31331408 PRJNA1088503_P_NODE_7556_length_261_cov_1.547414_g7184_i0 PRJNA1088503 7556 261 1.547414 4.03875054 Lingula anatina 7574 Brachiopoda other_Eukaryota 145 1.9199999999999998e-42   NR XP_013383640.1 7574 g7184 i0 77.9 2.96551724137931 86 19 98.9 0 3 260 61 146 XP_013383640.1 adrenodoxin-like [Lingula anatina] diamond 774 145 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;